RNA id: TCONS_00004131


Basic Information

Item Value
RNA id TCONS_00004131
length 563
lncRNA type antisense
GC content 0.40
exon number 2
gene id XLOC_002138
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 24397098 ~ 24398671 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTCCCCTACCACCATTTCCAGTCCCCGAAGATTTGCATAGACTTTTCCATTTATCCCTGACAGAAAACAGCAATGTTTGGTGTTATGAAAATAGTTATCTATCTTAAAATCTGCTTTTCTAAAACTGTGCTCTGATatgaaatagaaaataataaatctCCCTCCATTTATCCATCATCAAACAATGCCTCCTAGTGGTCACAAATTGACATTTCTTTGCCTATTACAGCAGAATGGATAGTTATTATAGATAACTATTGAAACCTCTCACCATACATCTTGTTGCTTTTCTGAAACTCGTCATCTCTTAGAAGAGGTTCTGAGCTGTTGTAGTAGGATTCAATGTTTTCTTCCAGGTACCAGGATTTGTTCTCGTCAAACACCATGAAAAGGAGAGCAAATTCTCTGTCCACATCAGTTCTCTGTCTATCCTGGTTCAGTGTTCCCTTCCTGCAGATCATTAATGGCCCAATCAGACCACTGGCTCTGAGCAGTAGGCAAAAGCAATGCAGTTTGGATCAGACACGCCTGGACCGGATTTCTCCGGAATGATCCACTGGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000140974

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004129 lncRNA upstream 21938 24316853 ~ 24375160 (+) True XLOC_002136
TCONS_00005711 lncRNA upstream 299788 24097055 ~ 24097310 (+) True XLOC_002135
TCONS_00005710 lncRNA upstream 300628 24096239 ~ 24096470 (+) True XLOC_002134
TCONS_00005894 lncRNA upstream 404181 23983307 ~ 23992917 (+) False XLOC_002132
TCONS_00005709 lncRNA upstream 404181 23990633 ~ 23992917 (+) False XLOC_002132
TCONS_00005895 lncRNA downstream 6019 24404690 ~ 24412025 (+) False XLOC_002139
TCONS_00005896 lncRNA downstream 7873 24406544 ~ 24407548 (+) True XLOC_002139
TCONS_00004136 lncRNA downstream 30458 24429129 ~ 24435726 (+) False XLOC_002140
TCONS_00005712 lncRNA downstream 40949 24439620 ~ 24445992 (+) False XLOC_002140
TCONS_00005897 lncRNA downstream 252192 24650863 ~ 24655184 (+) True XLOC_002144
TCONS_00004127 mRNA upstream 99056 24048663 ~ 24298042 (+) False XLOC_002133
TCONS_00004126 mRNA upstream 99056 24048663 ~ 24298042 (+) False XLOC_002133
TCONS_00004128 mRNA upstream 100509 24048883 ~ 24296589 (+) True XLOC_002133
TCONS_00004124 mRNA upstream 837554 23553533 ~ 23559544 (+) True XLOC_002130
TCONS_00004123 mRNA upstream 846142 23548674 ~ 23550956 (+) True XLOC_002129
TCONS_00004132 mRNA downstream 23346 24422017 ~ 24435893 (+) False XLOC_002140
TCONS_00004133 mRNA downstream 23346 24422017 ~ 24442546 (+) False XLOC_002140
TCONS_00004137 mRNA downstream 47027 24445698 ~ 24493323 (+) False XLOC_002140
TCONS_00004139 mRNA downstream 70251 24468922 ~ 24493273 (+) False XLOC_002140
TCONS_00004138 mRNA downstream 70251 24468922 ~ 24493273 (+) True XLOC_002140
TCONS_00004130 other upstream 43232 24353750 ~ 24353866 (+) True XLOC_002137
TCONS_00004125 other upstream 404399 23992381 ~ 23992699 (+) True XLOC_002132
TCONS_00004117 other upstream 979151 23417833 ~ 23417947 (+) True XLOC_002122
TCONS_00004107 other upstream 1490178 22891183 ~ 22906920 (+) True XLOC_002113
TCONS_00004103 other upstream 1549694 22847272 ~ 22847404 (+) True XLOC_002111
TCONS_00004134 other downstream 23560 24422231 ~ 24442358 (+) False XLOC_002140
TCONS_00004135 other downstream 28258 24426929 ~ 24435439 (+) False XLOC_002140
TCONS_00004147 other downstream 261471 24660142 ~ 24664449 (+) False XLOC_002143
TCONS_00004149 other downstream 270103 24668774 ~ 24672929 (+) False XLOC_002143
TCONS_00004165 other downstream 1549571 25948242 ~ 25960748 (+) True XLOC_002157

Expression Profile

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