RNA id: TCONS_00005896


Basic Information

Item Value
RNA id TCONS_00005896
length 425
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id XLOC_002139
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 24404690 ~ 24412025 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCCAGGATCGATTAGAGACTCCTTGGTCACTTGGTTCATCCCTGATGGTCCGTAATCCCACTGAACCTTCTCAGCAGCAATGAAATACTTCCTGATCTTCCCACTGAGAGGAGCCGTGGAGCTCGCCTCATCACTGCAGGACGACACATTGAACAGTGCCTGCATACCAGCTATTGAAGACAATAAGCAAAAGATGATCATTGACCTGGCAGTTTAACAGCCACGTCCCTATTGTGGCAGGAATCATGTTTGCAGTGGCAAAAGTGGCAGAAAACAGACTCATGACATCCACACGGTGCCCGCGGTCCAGAAGTGTGTGCCCGTGGAAATAAACTGAGTGAATGTCGATCTCATTGCCCATGCCAAAGAGATGCAGAGCAACTGTGCGGTTTTGACAAAACTCAATCCCCGGTAGGTTTCCAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004131 lncRNA upstream 7873 24397098 ~ 24398671 (+) True XLOC_002138
TCONS_00004129 lncRNA upstream 31384 24316853 ~ 24375160 (+) True XLOC_002136
TCONS_00005711 lncRNA upstream 309234 24097055 ~ 24097310 (+) True XLOC_002135
TCONS_00005710 lncRNA upstream 310074 24096239 ~ 24096470 (+) True XLOC_002134
TCONS_00005709 lncRNA upstream 413627 23990633 ~ 23992917 (+) False XLOC_002132
TCONS_00004136 lncRNA downstream 21581 24429129 ~ 24435726 (+) False XLOC_002140
TCONS_00005712 lncRNA downstream 32072 24439620 ~ 24445992 (+) False XLOC_002140
TCONS_00005897 lncRNA downstream 243315 24650863 ~ 24655184 (+) True XLOC_002144
TCONS_00004153 lncRNA downstream 283063 24690611 ~ 24692408 (+) False XLOC_002146
TCONS_00004155 lncRNA downstream 287026 24694574 ~ 24697980 (+) True XLOC_002146
TCONS_00004127 mRNA upstream 108502 24048663 ~ 24298042 (+) False XLOC_002133
TCONS_00004126 mRNA upstream 108502 24048663 ~ 24298042 (+) False XLOC_002133
TCONS_00004128 mRNA upstream 109955 24048883 ~ 24296589 (+) True XLOC_002133
TCONS_00004124 mRNA upstream 847000 23553533 ~ 23559544 (+) True XLOC_002130
TCONS_00004123 mRNA upstream 855588 23548674 ~ 23550956 (+) True XLOC_002129
TCONS_00004132 mRNA downstream 14469 24422017 ~ 24435893 (+) False XLOC_002140
TCONS_00004133 mRNA downstream 14469 24422017 ~ 24442546 (+) False XLOC_002140
TCONS_00004137 mRNA downstream 38150 24445698 ~ 24493323 (+) False XLOC_002140
TCONS_00004139 mRNA downstream 61374 24468922 ~ 24493273 (+) False XLOC_002140
TCONS_00004138 mRNA downstream 61374 24468922 ~ 24493273 (+) True XLOC_002140
TCONS_00004130 other upstream 52678 24353750 ~ 24353866 (+) True XLOC_002137
TCONS_00004125 other upstream 413845 23992381 ~ 23992699 (+) True XLOC_002132
TCONS_00004117 other upstream 988597 23417833 ~ 23417947 (+) True XLOC_002122
TCONS_00004107 other upstream 1499624 22891183 ~ 22906920 (+) True XLOC_002113
TCONS_00004103 other upstream 1559140 22847272 ~ 22847404 (+) True XLOC_002111
TCONS_00004134 other downstream 14683 24422231 ~ 24442358 (+) False XLOC_002140
TCONS_00004135 other downstream 19381 24426929 ~ 24435439 (+) False XLOC_002140
TCONS_00004147 other downstream 252594 24660142 ~ 24664449 (+) False XLOC_002143
TCONS_00004149 other downstream 261226 24668774 ~ 24672929 (+) False XLOC_002143
TCONS_00004165 other downstream 1540694 25948242 ~ 25960748 (+) True XLOC_002157

Expression Profile

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