RNA id: TCONS_00004124


Basic Information

Item Value
RNA id TCONS_00004124
length 2726
RNA type mRNA
GC content 0.37
exon number 5
gene id XLOC_002130
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 23553533 ~ 23559544 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGGAAAGCTGAACTGTCAACCTACTTAgacataaaaataaactgaacaaaacaaacaaacaaacaaaaacatattaaccATATAACTGGACTTCTACACACTGCAAATACAATAAGCAAAGacttgcaagaaaaaaaaacaaggaacagAATGTGAGAGCAGAACCGTTTTCTTCGAATATCTGCTATGATCATGAGGCATCTGTTATTAGTCCTATTTGCTGCACTAAAACAGGATATGATGATCTTGACTAATGGAATGGATTGAAAAAGTAAAACCTTAAAAGTGGAAGCGCAGAGCAGCACAGTCAACTCtagaaaaaacattaataatctcAAATTTAACATCAGCAAACTCAAAATGTCTTATTACGGCAATATGGATATTCACGAAACACACAAAATGAAgagagaggaggaagaggagatggAAATTTATGCTAACGCAGATCCAAACAACAGTTCTGATGTTTGGACAGAAACGGACAACTCGGTTACCAGATGCAAGAAACTCCAACACACAGGAAGTTATTCTGTGAGGATCAAAAACTCCAGAGCAGCTCCAGTGTGTTTGGTGCTACTGTGTTTTCTTCTGCTAACTGTAGTCATGGTGTTAAGTGTCATCATCTATACAAACAACAAAAACTACACTGAAGAGAGACACCAGCTACTAACAAACATCACCAACCTCACAGAAGACAGAGACACACTGCTAACTAAGGTCACCAACCTCACAGAAGACCAAAATCAGCTACATGCCAAGAACATAAGACTTACTCAAGAGAAAGATGAATTATCGTCCAATGAACAAGACCTGATTAAACAAAGAGACCACCTAAATCAACTGTTAAAAATGGAATGGATTTACTACCGTTCCAATCTTTACTACTTTTTCAAGTTGAAAAAAAGCTGGACTGAGAGCAGAAGATACTGTAGAAACCATGGAGCAGATCTGGTCATCATAAACAATAGAGAAGAGCAAgattttgtTGATAAAATAACTGCTGGTGAGAAAGCCTGGATTGGTCTGTCTGACAGTGATGTGGAGGGCAGTTGGAAATGGGTTGATGACAGCAAACCAACCTCTTGGATCTGGCATCATGGAGAACCTAGTAGTGGTGGAGGACAAGTGGAAGAAGACTGTGTTTTAACTGTTACATCAGCATGGGCTGATTACCCATGCGATGCTGAATTCCAATGGATCTGTGAGAAGAGAGTTTTTAAATAAccattttcatatttattgtcacctcttttttgctatttttgtttaCTCTGTTGGAAAAACCTCTCGTTAAAACCATCTGATGCTGAAATCTTAATCCATGTATTAATCATGTCACATCTGGATTACTGCAATACTATTGTTTTGGTCTGCCTAAAAAAAACGAATTGCCAGGATGAAGTGTTTAAAACTCAGCAGCAAGAGTTCTCATTTCTGCTCACATTACTCCTCTACAAGCATCACTGGATACCTGTGCCATTGCATAAACCGTTGAAAATATTACTCATATTTAAATCATTAACTGTGCTTTCACATCTTTCTGGCCTACTGTACCTTTACTCTCCTGGCTCTAAGCTCAGATCATCTGAGCTTGATCTTTTGGCTGTTCCTCTTTGTCAGCTGTCCACTTTAGGTGGAAGGTTTGGTGTCAATGCTCACAAGTTATGAAATGTACTGCCTCTTACACTTAGAAATATTAGATTTGTCtacttttaatgtatatttttaatttgtattttgtataATGTAGCTTCACCGGCCATATATGTATGTTGTCCATGTGAATGTGCAATTTGTTAAGTGATCTTAAGCAATGGGCACTACAGTGTGTAAATAAAACACGAGCTGTTGGTTTTTGTGATGGAATAAATGAATATGCACTGGACTTTCAGTAATCTAGCTCAATCGATTATAGTAAACTGTCATGTCATTATAAAATCACCTTGTTTTAAGATCTGTTTTCCataaaatcaatgatcttcactgcctgattgaaaTACtttataaagtgggtctcagactggacaagaagcactgcattaaactccATATGTGAGTGCAGGAGTTTCAGTGCTCTCCTGTTGCTACTGACTGTGCTTTTGTCAtgttttacagcatcaatgctcTAAAAGAAACATTATGATATTGAAAATATTCACATCAACCCttaaccggaagtttatcagtggcTTAAAAACACTTGTCGGGCATATATATAGGCTGAAAATAGAGCTGCATAGTTAACAGGTACTAAAATAGCATTACACTAAAGCACTAAAATACCGGTGATGCCATTGTTTTTGAAATGGCAGAATCATGGATGCAGGCATACAATAGTCAAGCTGTATGTTTGACAGTTAGGCCACTtgacaatgtttatttaaatacttcCATCTgcaagacattaaaaaaagagcCTTTCTGAGTGCTCTCTGTTATAAATGTATGTTTACATCATATATGGTactgattgtttttaaatgttttcaattcTTCTTACGTTGCAAATCTGGTGGTCGCATTGCAGAAGTTTTAACAAGTTGTCTTAAGTTTCATGGAAGAGCTCTGAAATTATAAAAGGAGAACTGATGACTGGAAGAAAGGAGGACCAGACCAACGACACTTTATGTTGTGCTTTCGTTTCTGTGTATACAGAAGTTGTCTGTGAGAGTAACTGTTTTGTGTTGATTTtacaattaaattgtatttaatgctTGGGGGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000159654

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005708 lncRNA upstream 9467 23542617 ~ 23544066 (+) True XLOC_002128
TCONS_00005892 lncRNA upstream 337654 23141296 ~ 23215879 (+) True XLOC_002121
TCONS_00004113 lncRNA upstream 514243 23034329 ~ 23039290 (+) True XLOC_002119
TCONS_00005891 lncRNA upstream 588107 22960289 ~ 22965426 (+) True XLOC_002117
TCONS_00005890 lncRNA upstream 597696 22942413 ~ 22955837 (+) True XLOC_002116
TCONS_00005893 lncRNA downstream 29131 23588675 ~ 23591058 (+) True XLOC_002131
TCONS_00005894 lncRNA downstream 423763 23983307 ~ 23992917 (+) False XLOC_002132
TCONS_00005709 lncRNA downstream 431089 23990633 ~ 23992917 (+) False XLOC_002132
TCONS_00005710 lncRNA downstream 536695 24096239 ~ 24096470 (+) True XLOC_002134
TCONS_00005711 lncRNA downstream 537511 24097055 ~ 24097310 (+) True XLOC_002135
TCONS_00004123 mRNA upstream 2577 23548674 ~ 23550956 (+) True XLOC_002129
TCONS_00004122 mRNA upstream 11645 23537576 ~ 23541888 (+) True XLOC_002127
TCONS_00004121 mRNA upstream 30218 23520952 ~ 23523315 (+) True XLOC_002126
TCONS_00004120 mRNA upstream 33635 23511816 ~ 23519898 (+) True XLOC_002125
TCONS_00004119 mRNA upstream 47766 23502026 ~ 23505767 (+) True XLOC_002124
TCONS_00004127 mRNA downstream 489119 24048663 ~ 24298042 (+) False XLOC_002133
TCONS_00004126 mRNA downstream 489119 24048663 ~ 24298042 (+) False XLOC_002133
TCONS_00004128 mRNA downstream 489339 24048883 ~ 24296589 (+) True XLOC_002133
TCONS_00004132 mRNA downstream 862473 24422017 ~ 24435893 (+) False XLOC_002140
TCONS_00004133 mRNA downstream 862473 24422017 ~ 24442546 (+) False XLOC_002140
TCONS_00004117 other upstream 135586 23417833 ~ 23417947 (+) True XLOC_002122
TCONS_00004107 other upstream 646613 22891183 ~ 22906920 (+) True XLOC_002113
TCONS_00004103 other upstream 706129 22847272 ~ 22847404 (+) True XLOC_002111
TCONS_00004086 other upstream 1517286 22035161 ~ 22036247 (+) False XLOC_002097
TCONS_00004078 other upstream 1572868 21980547 ~ 21980665 (+) True XLOC_002095
TCONS_00004125 other downstream 432837 23992381 ~ 23992699 (+) True XLOC_002132
TCONS_00004130 other downstream 794206 24353750 ~ 24353866 (+) True XLOC_002137
TCONS_00004134 other downstream 862687 24422231 ~ 24442358 (+) False XLOC_002140
TCONS_00004135 other downstream 867385 24426929 ~ 24435439 (+) False XLOC_002140
TCONS_00004147 other downstream 1100598 24660142 ~ 24664449 (+) False XLOC_002143

Expression Profile

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