RNA id: TCONS_00004140


Basic Information

Item Value
RNA id TCONS_00004140
length 4453
RNA type mRNA
GC content 0.51
exon number 15
gene id XLOC_002141
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 24504292 ~ 24622317 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATCATTGTCGTTCCTGTTGTGATGACAGCAGCCGCTGGCTGATGCCGCGATTACCGTTCACCGCGGCGTCCGGCAGAGGGCGGTGTTAACGGGTACCACACAGCAACTGCCGCATCCCGGATGAGAGACGGAggaaaacagaaagagagagaaagagagagagagatagaggtgAGCACGAGAAAGATGCTTGGTTCAAAACACCGCGTCGGAGCGCTGCGTTCAGTCAGCGGGTCTGCTGTAGAGGAGAACGGGCGCTGAGGGCTGTAGGAGGGCACACTCTACCTGTCTTTCTCGAAGGTTTGGCACCAGGTGGATGAACAAGACATTTCAAGGTCATAAAGTGATGTCATCAAATGCATTGCCCTGTTGAGGATCGAATACATCTCAGTCTGTTTTCAGTATCTTGGAGCAGAAATGAAAACGAGTGAAATGTGGTTGTGAATGTGTGTCTTTGAAGGACTAGGTGGAGGCAAGTGAAGGAGCAAGACCTTTGATGGATCCAGGATTACTGCTGAGCTTTTGACAGACTGATACAACATGAATGTGCAAGGAAATGCACAAGCTGGAGAAAACAACCAACGGGAAATACAAAACGAGGACAAGCAGACTTTGCTAGAAGCTGTAGAAGATGCCAATGCCAATCAAATCACCAAAGAAAAAATTAATTCAGATGACCGAGAGAATGACAGTTCCGTACCCATGTCGCACTCTGAAGCAAAGGAGAGGATCATTATCTGGGGAACACATGCTCGAAGTGTAGACCCTGAGCTGGAAGAGTTTGAACTGCTGGAGTCTAATGAGTTAGAAACATTTATTGTGGACAAAGAAGAGGTACACATTTCGAGTGAGAGAAGACAGAATGGAACAAAAAACTTTGGTGACAGGAAGTTGACTTTTGGATCCCCTTGGAAAGACCACAATGAAAACCACAGTGTGGATGGAGATGCAAATGAGAACTCACAGCCCCTTGACCTCAGGACCTCTAGCTCTCGCTCTGGTGCAAACCGAACCCTGAGAGATGGCCGAAGTGGATCTGAAAGCAATGTCTTTTCATCTTCTCTTTCTGCAGTGACCAGCCTCAGTGGAAGTTTAGCCAGTGCCCTGGACACTGCAGGCTGCACACAGCCTCTCTATTCCCAGTTCACCAAGTCTACCTCAGGCAAAGGCAGGAACCAGCAACCAGCTACTACTGAGTCCTTCATCCACTCAGAGAGAAACAGGGATCTTCCCAGGGATTTGGACCAAAACCATAACTCTACTATACTGCCTCAGGAACCACAATATGACCGAAGTAAGCTAATCACTCCAAGTGGTGCATATCCTTCAAATGGAACCATAAAAGTGCATAAATTCCCAATGGAAGCGGAGCAGAATACTGGATATAAATGGATGTCAACTGAGGTGCCGAAAGGTATGGTGAGGGTACAACCTTCTTGTCGGCAGCTTGTCCGCCCTCTTTCTACAGAAAAGCGATTAACCTCAGGATATCCCAACAGTGACCAGGCAGACCAACAACAATCCCACTATTCAGAGACCTGTCATGGACATCAACAAGTGCTAGCTTGTACAGAAGTCAACAGTAATCCCAACACAGGCACAGAGATGGTTCACAACCAGACCTTTACCAGAGAAGCCCAACGTATAAAGAGGCAGAGCTCAGCAGATCGTGCCGCAAGTCCCTCCAGCCTTGAAAGAAAGACACACTTCAGCCGCCGGGCCTACAGCAGTCCAAGTAGACCATCCCCTCCTCCATCCCCCAAGACCACAAGGTCTCCTCAAAGGCATCCTTCATCATCACCCATCAAAACTTTACCCTCTCGAGCTCCACAGTTGGGTTATGCTGGGTACACTTCAGGCTTAAGAGCCCCAGTGAAAACAACTATTAACACAAGCGTTCACAAACCTCTTGCACAGCAGACTTCAATGGAGACCTCCCCGCCAAGCAAGTGTctgccaaaaccaaaaagtgtccGGCCCAAAATCATCACATACATTCGAAAAACCCCGCAGGTGAAACCCCAGCCCCTTGAAGGATCTTACGAGGTGTCATCCTTACCTACAAGGCTCTCAACATACAGCAGCACACAGGCCAAACCAGCTGTAGGAGATCAAGGGGAAGCAAGTGTGCTGAGTGCCTCAAATTTACTCTACGATAAGTATCGACAAGAGATGCAGAAGGTCCGATTATTCTCTCCTGGACTAATGGGGTCTGGGATTAAACCACCCAGCAACACCATGCCTCACAAAATGGCTGGCAGATCGGACAGCTTCTACGGGTCTCTTAACAAGCCTCTATCTGCAGCAgtGGGACGATCCGCAGTTGGCCTTGGGTCTCCAGTGTCTGCAGCTGAGGACCCATCTGGATCACCTATGGGAGCACAGGATACAGGGAGTCTTTTTCGTTCACCACGGGGCCTAAGACCTCAACTTGGCGTTGGTGCTGTAAACAGGACTCCTTCTGTACTTGCAAAAGGCAGGATGACCTTAACAAGTCACCCAAAGTCACCACTGACCATCAGTCAACCAATGCAGGCAGTTAACCCAACCACTCAAACTCCTCAGGAAACACAAGATCAGAGAAAGCCGGTGTCGACGGGTTTAGCTGCTAAATCTCTCCTGCCGAAGCCGGCTCAGGCTCAGTCTGGCCTGCGTCCTCCTGGTTATTCGCGTCTCCCTCCGGCACGACTGGCTGCTTTTGGGTTCGTCCGAAGCTCCAGCGTCTCTTCTGTGTCTAGTAACCACTCCACTGACAGCACACGGAGTGACCCCTGCCGACCTGCTTACCGTCCCAACAGTGTAAATGATGAGCCACCGCTTCACCGTGTCACCACATCACCACCTGGGGATGGATCCAGAGCACCCTGTCGCAGCACCCCTCAACCTCCAAACACTCCTGCGCCCGTACGCCGCTCCCTGCTACCTCCTCCTCGAAGTTCACCCGTGTTATCCCGTAAGGAATTCCAGAAGAGTTCGGATGGCTCCCGTTCATCCCAGTCATCCCCTAAGAGACTCGCTGTAGTGTCTCCTAAACCACAATCTCCAGTCCTTCAGAGGCAACAGAGGACAACAGTGGCGGTCCGAGGATCAAGCGTGCAGATACTGCCTCGCTCTGGCTCCCCAGGACTGGAAAAGAAAAAGGCAGAAGAAGAGCAGAAGAAAGAGAAGGAGCGCGAAGAAGCAGAGAGACACGTGGAGCTGCAGATCCTGCAGGGTCGCTATGAGGATCAGGCCAGAAAACTGCAAGCCCTTCAGACTGAGCTGAAGAGAACCAACATGGGCCTGGAGGTCTTCATCATCTGCACTCAGCACTTCTCAATCAAGAGTGAAAGTGCTGAGCAGAAGGAAAGAGAGCTGTCAGAGGAACTTAGTCGGATTCAGCATGAAGTGGCCTTTAACGCAGCCCGCTGGGAGCATCTTCAGAAGGAGAAGCGAGAGCTGGAGGAGTGCTTCGAGAAGGAGCTCAGAGAGTTACAGGTGCAGCAGAATTCTGAACTGGCCACCTTAGAGGAGAAGCTGAGGTTACGACACGCTTCAGACAGAGATCATCTGAGAGCAGAGCATCAGTCAGAAGTGGAGGAGCTCCACACACAGCACCAGGAGCAGATTGAAGAGTTGACTGCCAACCATGAGGCTGCCCTTGAAGACCTGAAAACCATGCACAACATCACTATGGCAACACTCCAGGAGGAACATGCCAGGACGATGAGAGATTTAAGGAAAGCCCATGAGCAGCAGAAAGCCAGTCTAGAAGAGGACTTCGAGAAACTGCGCCTCTCACTTCAGGATCAGGTGGACACTCTGACATTCCAGAACCGGACTCTGAAAGACAAAGCTAAGCGTTTTGAGGAGGCACTGAGGAAGAGCACTGATGAACAAATTGTGgATGCGCTGGCCCCATATCAGCATATTGAGGAGGATCTGAAGAGTCTGAAAGAAGTTCTGGAGATGAAGAACCAGCAGATTCATGACCAGGAGAAAAAGATCTGTCATCTGGAGAAAGTGCAGGCTCAAAAGAACCTGTTCCTGGAGGAGCGGGTCCAGGTACTTCAGCAGCAGAATGAAGACCTGATGGCCCGCATAGACCGACACCTAGTTGCGTCAAGACAACTGTCTGAAGAGAATGCAAACCTCCAGGAGAATGTAGAGAAGGAAACCAACGAGAAAAAGAGGCTGAGTCGCAACAATGATGAGCTGCTGTGGCTCCTCCAGACAAGTCCCCACCTATCACCAGCCTCATCCCCCATCCACAGAGCCTTCTTCACCGGCCCTGATATTCCCCCATACTCTTACTCTCCAGGCCCTGGGACCCCCACACACTCGTCCTCTCCTGGCCCTGGTACACCTACTCACAAGGTGGCATCTCCGGCACCAGGGACACCCACTTTCAGAGGCTCACCAGCACGCTCGTCCCCCGCACGCATCCCAAATGCCAATACTTTACCTAGATGA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-75 Predicted to enable microtubule binding activity. Predicted to be active in nucleus. Predicted to colocalize with cytoplasm. Orthologous to human MTUS2 (microtubule associated scaffold protein 2).

Ensembl:

ensembl_id ENSDART00000090059

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005712 lncRNA upstream 58300 24439620 ~ 24445992 (+) False XLOC_002140
TCONS_00004136 lncRNA upstream 68566 24429129 ~ 24435726 (+) False XLOC_002140
TCONS_00005895 lncRNA upstream 92267 24404690 ~ 24412025 (+) False XLOC_002139
TCONS_00005896 lncRNA upstream 96744 24406544 ~ 24407548 (+) True XLOC_002139
TCONS_00004131 lncRNA upstream 105621 24397098 ~ 24398671 (+) True XLOC_002138
TCONS_00005897 lncRNA downstream 29224 24650863 ~ 24655184 (+) True XLOC_002144
TCONS_00004153 lncRNA downstream 68972 24690611 ~ 24692408 (+) False XLOC_002146
TCONS_00004155 lncRNA downstream 72935 24694574 ~ 24697980 (+) True XLOC_002146
TCONS_00005713 lncRNA downstream 193665 24815304 ~ 24819159 (+) True XLOC_002147
TCONS_00005898 lncRNA downstream 213120 24834759 ~ 24835445 (+) True XLOC_002148
TCONS_00004137 mRNA upstream 10969 24445698 ~ 24493323 (+) False XLOC_002140
TCONS_00004139 mRNA upstream 11019 24468922 ~ 24493273 (+) False XLOC_002140
TCONS_00004138 mRNA upstream 11019 24468922 ~ 24493273 (+) True XLOC_002140
TCONS_00004133 mRNA upstream 61746 24422017 ~ 24442546 (+) False XLOC_002140
TCONS_00004132 mRNA upstream 68399 24422017 ~ 24435893 (+) False XLOC_002140
TCONS_00004142 mRNA downstream 6044 24627683 ~ 24641400 (+) False XLOC_002142
TCONS_00004143 mRNA downstream 10337 24631976 ~ 24637157 (+) True XLOC_002142
TCONS_00004144 mRNA downstream 21440 24643079 ~ 24663715 (+) False XLOC_002143
TCONS_00004145 mRNA downstream 21442 24643081 ~ 24662729 (+) False XLOC_002143
TCONS_00004146 mRNA downstream 38378 24660017 ~ 24677414 (+) False XLOC_002143
TCONS_00004134 other upstream 61934 24422231 ~ 24442358 (+) False XLOC_002140
TCONS_00004135 other upstream 68853 24426929 ~ 24435439 (+) False XLOC_002140
TCONS_00004130 other upstream 150426 24353750 ~ 24353866 (+) True XLOC_002137
TCONS_00004125 other upstream 511593 23992381 ~ 23992699 (+) True XLOC_002132
TCONS_00004117 other upstream 1086345 23417833 ~ 23417947 (+) True XLOC_002122
TCONS_00004147 other downstream 38503 24660142 ~ 24664449 (+) False XLOC_002143
TCONS_00004149 other downstream 47135 24668774 ~ 24672929 (+) False XLOC_002143
TCONS_00004165 other downstream 1326603 25948242 ~ 25960748 (+) True XLOC_002157
TCONS_00004166 other downstream 1342645 25964284 ~ 25964399 (+) True XLOC_002158
TCONS_00004170 other downstream 1684590 26306229 ~ 26306343 (+) True XLOC_002162

Expression Profile

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