RNA id: TCONS_00005886


Basic Information

Item Value
RNA id TCONS_00005886
length 1365
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id XLOC_002101
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 22275913 ~ 22279448 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTATGGACTTTCTTGTTATATTAATCcccaaagaagaagaaaaaaaatcagtttggAACAGAATGAGGGTGAGTATATTTAATAGATTGAGTCAAATATACCTCTAATAAACATTATATAAGGCTGTACTGATTGGTGGTACATTTAATTGTGAAGAGTTGAATCAAAGTTCTATTTAAATACACAAAAGATGCATTAAATACCTTTagccatatacatttttaataaagtcgTAGTTTTTAAAGGAATGGTTCACCCAACCAGATAAATGACTAACTTTTTActgaccctcaagtggtttcaaacctttataagtttctttatcCTGTTGAACACTAAGCaggcacacaaacaaacaaccacACAATATAAATCTGATGCTTTAATTTTCATGGATACTGTCTTGCAAAATGATTTCTATACTTATGCATGCATCTTTAGCATCAGAAAATATGCTCTGTACTTTGTGTAAAGAGTGGTGGTGACCCATGAACtagtttataacaaaacagattGTTTTCTTTATCATTTTTAGTTGTGAAATCATTTTAAGAAAATAAGTCATTTAAATATGCAGCGATGGAATTAGATAAAACAGAGAAAATTAGATTgagtaatataaaaattaaataataataattttaaaaaagtacaaaGGGTGGATTTTAAGACTGTTGGGCTAAATCACTAAACCCGCCCCTGCTTAAGATAACTAAACAAAGGCAGGATGTCAATTTTGAGCTGGAGAATCTCTTTAAAGCGAGATGCTTTCTTTAATTGTGCTCCTTTTGCCCTTCACGTGTCGCGCCTGATATCTGATCACCTCTCAGATCCATTAGAGAACAGTTTCTGTCAGAGCCTATTAAAGAAAGAGCAGCCACTGCCAAACACACGCACCAGCAGGACCAGTGCATATAGATTCTAATACCAGATATCCTGATTCGATTGAAAAAATGCAAATAAGTCCCCTGATGCTTAGAGCTAAAGAAGAGAGCGTGGGTGAGAGAAAGCTGCTGCCACGTTTGCGGGAaccgagagaaagagagagagagattttctCAAGGGCTTTTACTGGATGATTCTCAGTCACTTCCTGTTACCTGTGCATGAAGCCTTTGCAGACATGATGAGGTGATCGGGTCTGTCAAGCCTCCGCACTCTCCTGTCTTGTCTGCTCACCACCAGCCAGAGTGTGTGTAAATCATTACATCACTTCACATCCGGTGTCAGACGTGGACACACGCTGAGGACACTGTTCTGTCTGTGTCCTCAGAGCACCCATCGGCTTTTGGTCTGCATGTGTGAGATATGTCAAACTTTTTTTGAACCGGTTATTTTTGGTTGCTGAATATTTGGAAGGCTCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005885 lncRNA upstream 2051 22253344 ~ 22273862 (+) True XLOC_002100
TCONS_00005884 lncRNA upstream 12648 22224203 ~ 22263265 (+) True XLOC_002099
TCONS_00004088 lncRNA upstream 136573 22134533 ~ 22139340 (+) True XLOC_002098
TCONS_00005883 lncRNA upstream 231155 22034601 ~ 22044758 (+) False XLOC_002097
TCONS_00004087 lncRNA upstream 231155 22041530 ~ 22044758 (+) True XLOC_002097
TCONS_00005707 lncRNA downstream 93853 22373301 ~ 22377028 (+) True XLOC_002102
TCONS_00005887 lncRNA downstream 340882 22620330 ~ 22621291 (+) True XLOC_002106
TCONS_00005888 lncRNA downstream 554863 22834311 ~ 22838481 (+) False XLOC_002110
TCONS_00005889 lncRNA downstream 554966 22834414 ~ 22838481 (+) True XLOC_002110
TCONS_00004111 lncRNA downstream 658783 22938231 ~ 22956370 (+) False XLOC_002116
TCONS_00004081 mRNA upstream 230794 22034477 ~ 22045119 (+) False XLOC_002097
TCONS_00004083 mRNA upstream 231281 22034601 ~ 22044632 (+) False XLOC_002097
TCONS_00004085 mRNA upstream 231419 22034627 ~ 22044494 (+) False XLOC_002097
TCONS_00004084 mRNA upstream 239546 22034626 ~ 22036367 (+) False XLOC_002097
TCONS_00004079 mRNA upstream 243992 22003750 ~ 22031921 (+) False XLOC_002096
TCONS_00004089 mRNA downstream 102354 22381802 ~ 22478129 (+) True XLOC_002103
TCONS_00004090 mRNA downstream 230832 22510280 ~ 22529956 (+) False XLOC_002104
TCONS_00004092 mRNA downstream 230832 22510280 ~ 22533793 (+) False XLOC_002104
TCONS_00004091 mRNA downstream 230832 22510280 ~ 22533793 (+) False XLOC_002104
TCONS_00004093 mRNA downstream 248267 22527715 ~ 22533186 (+) True XLOC_002104
TCONS_00004086 other upstream 239666 22035161 ~ 22036247 (+) False XLOC_002097
TCONS_00004078 other upstream 295248 21980547 ~ 21980665 (+) True XLOC_002095
TCONS_00004049 other upstream 455856 21708463 ~ 21820057 (+) False XLOC_002083
TCONS_00004103 other downstream 567824 22847272 ~ 22847404 (+) True XLOC_002111
TCONS_00004107 other downstream 611735 22891183 ~ 22906920 (+) True XLOC_002113
TCONS_00004117 other downstream 1138385 23417833 ~ 23417947 (+) True XLOC_002122
TCONS_00004125 other downstream 1712933 23992381 ~ 23992699 (+) True XLOC_002132
TCONS_00004130 other downstream 2074302 24353750 ~ 24353866 (+) True XLOC_002137

Expression Profile

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