RNA id: TCONS_00004056


Basic Information

Item Value
RNA id TCONS_00004056
length 4409
RNA type mRNA
GC content 0.41
exon number 5
gene id XLOC_002083
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 21650828 ~ 21820133 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAGTCGGGAGGAAAAGGTTGGAAACATGGCTCGCTATTCTTCTATGCGTTATGCGCAATGGCTTTATTTTCTTCTCGCGTGAGCGGACAGATCCGTTATTCGATACCTGAGGAAATGCAGATGGGCTCGTTTGTTGGAAATATTGCCTCGGACCTTGGGTTTGAGCCGAAGAGGTTGGTTTCAGGAAAAGCGCGTGTTTTCACCGCGGACAGCAAGGAGTACATTGGCCTGGACAAGGAAAACGGACATCTGGTTATAAGGAATAAAATAGACAGAGAAGAGCTTTGTGGAGAGATTTCTGCCTGCAGTGTGGGTTTTGATGTGATTTTGGAGAATCCGATGGAGCTTTATCGAGTAACAGTTGACATACAAGACATCAATGACAACAGCCCCGTCTTTCCAAAAGCTAAAATTGAACAAGAAATAAGCGAATTAGCGGTTGTAGGTGCGCGATTTCCATTAGAAAGCGCGGTAGACCCAGACGTGGGAGTGAACGCGCTACAAAAATACACTCTTCAACCCACCGACCATTTTAAGCTTAATGTTCAGAAAAGTGCTGGTGGAAATAAAAACGTTGAGATGGTTCTTCATTCTCCTCTcgacagagaaaataaaaagcATCATAGTTTGATTCTGACAGCATTCGATGGTGGAAAACCGCAAAGGTCCGCAACGTTACTGATTAATATTATTGTTCTAGATGTTAATGACAACGCACCTGTGTTTAGTCAGTCATCTTACAAAACATCAGTTATTGAAAACGTTGCTAAAGGCACACTCGTTACTAAAGTCAGTGCTACCGATGCTGACGAGTCTAGTCACGGCATTCAGTATTATTTTGAGCACGCGACACCCACAGTAAAAGCTTTGTTCTCCATTGACACAAATTCTGGGGAGGTTAAAGTCATGGGTGATATAGATtatgaaaaacacaaacagtttACAATTAAAGTTAAAGCTAAAGATCACGGGGGTTTGACCGATACAAGTGAGATAATTATTGACGTCATTGATGTGAACGACAACAAGCCCAAAATCACTATAATGTCTTTTTCCAGCGCAGTATCTGAAGACGCTGCACCAGGAACTGTTATAGCCATGATTAATGTTCAAGATCTCGATTCAGGTGACAACAGCAAGATTACATGTTCGATTGATCTGAACTCTCCATTTAAAATCATTTCTTCATTAACTAATTATTACAACCTGGTGACAGACTCAGAACTAGACAGGGAACAGACAGCAGAGTATAATATCACTATAACTGCAGTAGATGGAGGAAACCCACCTCTTTCTATTAAAGAGATTTTAAACTTAAAGATATCAGATGTGAATGATCATGCACCTCAGTTTGTGCAGGAATCATATAATGCCTTTATAGCTGAAAATAACCCACCATCTACGACTATTCTGACTGTCAAAGCAGAGGACATGGACTGGGGGCCGAATGCAAAGGTCTCATACTTTCTTATCGATGCAGATTTAAACGGAGCACCTCTGGCATCTTATATTTCTATAAATTCAGAGAGTGGAGTAGTTTATGCAGAAAAATCTTTTGATTATGAACAACTCAAATCATTCAAAATGCAAGTCAAAGCTCAAGATGGAGGCTCGCCTCCTTTATCCAGTAATGTGACTCTAAACATCATCATTCAAGACCAGAATGACAACGCTCCTCAGGTTCTGTATCCAGTACAGACTGGCGCTTCAGTGATGGCTGAGATTGTgcctcgtgctgcagatgttgGATATCTGGTCACTAAAGTGGTGGCTGTTGATGTGGACTCTGGTCAGAATGCCTGGCTCTCCTATAAACTACAGAAAGCTGCAGACAGAGCGCTGTTTGAAGTGGGTTTACAGAATGGAGAAATAAGAACTGTGCGACAAGTGACTGATAAAGATGCTGTCAAACAAAAACTCACTGTTGTTGTGGAGGATAACGGACAGCCCTCTCGCTCAGCTGTGGTCTCCATTAACGTGGCTGTGGCTGACAGCTTTCCTGAAGTGCTGTCAGAGTTCACAGACTTTACGCATGAGAAACAATATAATGACAgcttaactttttatttagttcTGGCTCTTGCGGTGGTTTCCCTGCTCTTCGTAGTCTCCATTATTTCCATCATTTCAGTCAAAATCTACAGATGGAGGCAGAATAAGTTGTTTTATAAATCAGGAGCAAATCTACCGGTAATTCCATATTATCCTCCGGTCTACGCAGACGGCACATTACAGCACGTTTATAATTATGAAATGTGTGGGACCACAGACTCAAGGATGAGTGACGTGAAGTTTGTCAGGCCCTACAGTCAGAACACACTGGTCAGCCAGAGTCGTGTGGGGACAGTTCAGAGAGAAAAGAAGGAGCAGGAGGTTGATGAGCTGACTTTAGAGCAAAAGCCACCTAATACTGACTGGCGATTTCCCCCAAACCAGAGGCCTGGACCCAGCGGCCAACACAGGTTCCACACCCTGCAGCAGAGATGGACTCCATACGAGAAGTCCAGGGCTGGAGCACGTCCTGAAGAGGCAGGTGCCGGTGCTGGTGTGATAGCAGGAACAGGACCATGGCCCAACCCCCCTACTGAGGCTGAACAGCTCCAGGCTATGATGGCAGCAGCAAACGCAAGTGAAGCCACTGCGACTCTTGGCCCTCGCTACAATCTACAGTATGGCCCGGATTACCGTCAGAACGTCTACATCCCAGGCAGCACTGCCACCCTTACAGCCAACCCTCAGCAACAGGTTCTCCAGCAGGCCCTTCCTCCACCACAGGCCCTTCCACCTACCGAAGCCCCCAAAGCGGCTCAAACACCAGCCAGTAAGAAGAAACCCACAAAGAAAGACAAGAAGTAAGACCTGTGGAATAGCTGAAGAAACATGTTGCCGGGAATCTAAACATCTATCCTCTCAAACCATGTTGGGTTTGGATgaagatttaaaaagaaaaaagtgaataGTATTACTTGTTTTAGCGTTAACATGAGACAATAAGCAACCAAACAAGAGGAAATGTGTTCAGATTCCCGAAGCCATTTCTCTGACAGATATCTCTGTCTTGTAAATAGCATACTAAAACAAGAAGAAACacatttcttctttttattttttccctcaaatgTCACGTTTTAGGCTTTTTGTGTTCTTTTCAAAGCAAAGTAGATGCTTATTGTGGATACAAAATGAAACGCTGTTAGGCTTTTTAACATGATGTGCCACAACTCTCACCTTAACTGAAGAAAGGAGTATTGAGCTGAACTATGCATTGCAAAGGAGATACAAAAGGTGAACGTATATATAAAGTGTTTTCCAGGTGAGATAATACATGTATATTTGCGTAAAAAAATCTGACGGTGAGACACTGGATTGTCGGCATGGTGTTTAAAAATAGATTCAGTCTTCTCATTAACTTCTTAATAGCCAGTTAAGCAGAGCTGAATGTTAGGTTAATGACGTTTGACTATTCTTTGTTATTATTTCCTGTTGGCGTGCTAAAGAATCCTCTGGAAATGAAGTAatgtaaacagtgtttttttgATGCTGAGAAAAGATAATCACAGCCTTTGTAAGGTCAATGATTTGGGTCAAAGGAAGAAGATCTAAAGAAGGAAACAGCAGAAATGTGCTTGAATGGATCTTAGATGGAAGGATTTCATGTCTGTTCATCTGCACCTACCACCACTATCGTGTATATAAAATGTGTAACCTGTCTGTACAAACATTAGAGCCACAAGGGCTGGCTGTTACAGGAATGTTTcagtattttttacaaaaaaaagcaacaaaaaaagacactagaaaaaaaaaagatccagtgTAGTGTTTTAGGAATAAAAGCTTCAAGTCCATCGACTAACCAAACTGTACATACTACGAAACTTCTGATGACACGCAATCGTAGCTTAAGGCTTGTGGAGTATGTGCATATTTTTGTGTTTTCCCCCTCTTGATTACACTTTACTTTCCTCTTCTCCAATCACCTAAACCTTTGAAAGATAACAGACAATACTTATACTGTCTTTGCTATAGAGTAACACCCTTTCCTATCTTACTGTACTTTTCTGTGCTTGTAATTCCAATCAGTCCTTAATGATACTGGAATGCCACTCCTGTCTGTTTGACTttgaatatctatctatctatatatatataaatgtctgTCTGCTGCTTGGCTACTTTTTCTGTATTTGACTGTGATTCCTTTAAAGAAACGCTTAGCACCTCATGttactctttttattttataatctacTATTTATATCGCTGTTTGATTtatgttttactttattattggaacacttacatttgaaataaaattttgTCAGAACTCACATTCATGGCTGAGgtgtatttttcttttaactGCTTGGTTTGTAGACATGTGACTCCTTTACTAGTGTTTAgcg

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050609-7 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000188827

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005705 lncRNA upstream 13306 21745262 ~ 21745505 (+) True XLOC_002088
TCONS_00004043 lncRNA upstream 84353 21672253 ~ 21674458 (+) True XLOC_002085
TCONS_00004041 lncRNA upstream 84511 21671219 ~ 21674300 (+) False XLOC_002085
TCONS_00004040 lncRNA upstream 86472 21670863 ~ 21672339 (+) False XLOC_002085
TCONS_00005879 lncRNA upstream 215249 21542521 ~ 21543562 (+) True XLOC_002081
TCONS_00004074 lncRNA downstream 47174 21867307 ~ 21868226 (+) False XLOC_002089
TCONS_00004076 lncRNA downstream 47200 21867333 ~ 21868723 (+) True XLOC_002089
TCONS_00005706 lncRNA downstream 86019 21906152 ~ 21906377 (+) True XLOC_002091
TCONS_00005880 lncRNA downstream 94502 21914635 ~ 21944085 (+) True XLOC_002092
TCONS_00005881 lncRNA downstream 97744 21917877 ~ 21945344 (+) True XLOC_002093
TCONS_00004052 mRNA upstream 29565 21726853 ~ 21729246 (+) True XLOC_002087
TCONS_00004051 mRNA upstream 33499 21722892 ~ 21725312 (+) True XLOC_002086
TCONS_00004044 mRNA upstream 59636 21677058 ~ 21699175 (+) False XLOC_002083
TCONS_00004037 mRNA upstream 82392 21668606 ~ 21676419 (+) True XLOC_002084
TCONS_00004033 mRNA upstream 109639 21588002 ~ 21649172 (+) True XLOC_002082
TCONS_00004075 mRNA downstream 47174 21867307 ~ 21870457 (+) False XLOC_002089
TCONS_00004077 mRNA downstream 79620 21899753 ~ 21909696 (+) True XLOC_002090
TCONS_00004079 mRNA downstream 183617 22003750 ~ 22031921 (+) False XLOC_002096
TCONS_00004080 mRNA downstream 192256 22012389 ~ 22031866 (+) True XLOC_002096
TCONS_00004081 mRNA downstream 214344 22034477 ~ 22045119 (+) False XLOC_002097
TCONS_00004038 other upstream 84522 21670831 ~ 21674289 (+) False XLOC_002085
TCONS_00004042 other upstream 84522 21671222 ~ 21674289 (+) False XLOC_002085
TCONS_00004039 other upstream 85790 21670857 ~ 21673021 (+) False XLOC_002085
TCONS_00004021 other upstream 315399 21440978 ~ 21443412 (+) False XLOC_002078
TCONS_00004020 other upstream 322835 21434794 ~ 21435976 (+) False XLOC_002078
TCONS_00004078 other downstream 160414 21980547 ~ 21980665 (+) True XLOC_002095
TCONS_00004086 other downstream 215028 22035161 ~ 22036247 (+) False XLOC_002097
TCONS_00004103 other downstream 1027139 22847272 ~ 22847404 (+) True XLOC_002111
TCONS_00004107 other downstream 1071050 22891183 ~ 22906920 (+) True XLOC_002113
TCONS_00004117 other downstream 1597700 23417833 ~ 23417947 (+) True XLOC_002122

Expression Profile

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