RNA id: TU1327635


Basic Information

Item Value
RNA id TU1327635
length 3533
lncRNA type sense_over
GC content 0.42
exon number 1
gene id LOC110486123
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 31489817 ~ 31513332 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatacacaatgagtaatgataacttgactatatacacagggtaccagcactgagttgatgtgcaagggtatgaggtaattgaggtagatatgtacatatatgtaggggtaaagtgacaaggcaacaggatagataataaatagTAGCAACAGTGTTAGTGCAAAGAGGGTGAATGCAGATAGTCTGgttagctatttggttaactatttagtagtcttatggcttgggggtagaagctgttcagggtcctgttggttccagacctggtgcattggtaccgcttgccatgcggtagcagagagaacagtctgtgacttgggtggATGGTGTCTTTGACAAATGTtttcctctaacaccgcctggtatagaagtcctgggtggcaggaccatacacactaccctctgtagcgccttgcagtcggatgccaagcatttgccataccaagcagtgatgctacCAGTCAAGATGCCTttaatggtgcatctgtagaacatTGAGGATCTGATTTTTGaaattttcagcctcctgagggggaagaggcattgtcgtacCTTCTTCACAAATGTCTGGGTGGACAATGTttattccttagtgatgtggaactaaggaacgtgaagctctcatcgcgctccactacagccccatcgatgtggataggggtgtgctcggccctccgtatcctgtagtccacgatcagctcctttgtcttgttgatgttaagagagaggttgttgtcctggcaccacactgctagatcactgacctcctctctataggtgGTCTAAGCAGccttaatgatggcgttggactTGTGCGCAGccaagcagtcgtgggtgaacagggagtacaggaggggactaagcatgcacccctgaggggctcacatgttgagggtcagcgtggcaaaCTTTTTGCTTCCTTGGTTAAACGTGAGGACACATTTAAAAAATCGAGGGGAAAGATATGACAGGGTGGAACTGTTGAGTTGATGAATGCAGCCTTGTGCCTCTGTTGATTGTAATTACGGGTGTGGCTTTCAGTATTTAACATGGCTGTTCTTGTTGTTCTACATAGTCGCATTACCATGAGAAGGTTGGTATGCGCAGGGAGGATGGGAGTGGCAACATTGGGCTAGTCCACATTCTGAAGTATATCCGGGGATTTTGTAAGTGTGTATGGCAAGAGTACCCATATGCCAATTTGAcccactctccttctccccttgGCATTCCCTCGTGAGAGTATTGTGCAACATGTTCTGTGAACACGAGTAATTGATCTGATCTGTGTTATGCCATAGCTCAGGCATATATTGAATAGAATTGAGGAGTTGTCTGTCCCCTAAAGTTTTTTTTATGTCCTGTGATAGGGAATCAGTACGAGCTAGAGCTTCCAAGGAACATGTATGCCTGGAGCTGAAGATGAAATTATGGTGTCAAATATTTGTGGGTTGTTCACTATACCTCTGCCTATTATTCCCATGCTCCACTCCCTGATGTTAGAGAACCTGTGTGTTTCAGATTAGTCCCGAGGACCTCCCCTCGCGTATAGAAATGTGCCGTACTATCGACTACAGGAATAGGTAGATATATGTAAATCCCCTGTGTTACACATCAGAAAAGGGCACACAGTAGTgaaggctgagtcccaaatgccTCCttattcactatgtagggaatagggtgccatttgggactcagacttAGTGTATACTCCTCTGAAAGGTTATCATAGCGGGGATAGTTAGGAGAGACCGCGGATGGTTGTAACACAGGACAGTTGTAACACTCTCAATATCTCTAATCAGGAACAAGCTAGAATCATGTGACTCACTGTGCACTATTTATTGTGAAGAAGCAAGACCCTGTGATAGACTGCCGATTTTATtgaaaaaaatatgattttgagGTAAGAAATTAAACAAATTGACCAAATGTATTTTGCAGATAGCATCACCTGCTTTGTCGTTCACCAAACTTATCAGGTTTATAACCAGTGTGTAGATATATTATATGTACGCTATCAATGCTAAAGTTTGATCATGTGGCTAAAAATTGAAGATAGCTCATGGCTGCAAGGGTCAGGGTTAGCCTAAGGAGGTCTGGGTGCTGGGCATGCAAATTGCCACAGGAGGAATGCTGCCAGACATGTTGGTGCTGCAGGAAGATCAGCACACCTCAAATCCAGTGGTTATACGGTCAAATCCCAGGTGGAGTTATATTTTAGATGAACAGTTTACCACTTACTTTAAAACCACCATACCATTACTTTATTATAATGGTTTGGGATCATCTGGGACCATCGTGACGTCCTGACGACTGATAGAACAAGTGTCTTGAGAACATCCACTTGCTTAATCTATAGtatgtcacttttgttttgagccaaCTTCGCCGTGGGCGTTGAGCGGGGCACCTGGTTCACGCCCGGGAGGCAGCCCGGTTCCAAACCAAATGCAATTACTTTTTACCCAGGGCAAACTCCTGCCGTGGCAACCTGTGTCAGATAATCAAATGTCCCTTCAATGTCTCACATGCTCACGTTGTCACAttttatcacattaacttcacagaAAATGACACGTGTTCACTTGTGGAATTCATGAGGTTTTTTTTACATAAGGGACACCACATTCAGTTGTTTAGTCCAGATGTTGTTGTTTAGTCCAGATGTTGTTGTAGTGGTTGAGAAGGGCCAGTTAATGGAACGTAAAAAAATAATACACATTTTATgattttcattattattttattatttctgCTGCACAAAATGTTACCCTCTATGGTATCGGTGTCCCCCCccacaggacggttgagctaatgtgcgctaatgtgattagcatgacattTTAAGTAGCAAGAACAAGAAAGTtttaattattgttaatctaactgcactgttcaatttacagtagctgttacagtgaaatgtttttttcattgtattatcttttaccagatctaatgtgttatattctcatacattaatttcacatttccacaaacttcaaagtgtttcgtttcaaatggtatcaagaatatacatatcttgcttcaggtcctgagctacaggcagttagatttgggtaagtaattttaggtgaaaattgaaaaaaaagggtcCTATCCTTAAGGGGACGTGGCAATGTTGTTCTCATGGTCTCAGTAAGGCTTTCAATATTTCGTTGCATATCATGATTTTTGCATTTTTTTAACTGTTACATTTCACCCCAGGCCCTGTTACAACTGACCTGGGAGGTGACATAAATTGTAGCATTTTACTCCTTGTCTGTTTGATTTAGAGAGATAACACCTATACCTATTGGTAGCAGACAGATGGAAGCCGTTCCTATCACATTTTGAATGTAGCAGCTCAATACAATCTCTGAGAAATTGACAAAAATGCTAAAAGTGTTAGAACCATCCCGTCTCTCCAAAGTTATGAATTCTTCACCAGCACAGAGCAAATGTTAAGTCTTTGGCACACTATATATGCCCTGTTGGATCATCTGGTGCCCTTAACTTTGTGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1327605 lncRNA upstream 13143 31437305 ~ 31496657 (+) True G1164119
TU1327608 lncRNA upstream 27776 31445497 ~ 31482024 (+) True G1164121
TU1327580 lncRNA upstream 65166 31443274 ~ 31444634 (+) True G1164096
TU1327542 lncRNA upstream 152502 31355195 ~ 31357298 (+) True G1164076
TU1327532 lncRNA upstream 171390 31328752 ~ 31338410 (+) True G1164069
TU1328079 lncRNA downstream 10267 31523599 ~ 31524049 (+) True G1164530
TU1328087 lncRNA downstream 12947 31526279 ~ 31526494 (+) True G1164537
TU1328090 lncRNA downstream 17687 31531019 ~ 31533656 (+) False G1164540
TU1328092 lncRNA downstream 17687 31531019 ~ 31532178 (+) False G1164540
TU1328091 lncRNA downstream 18097 31531429 ~ 31532290 (+) False G1164540
XM_036939735.1 mRNA upstream 67662 31409126 ~ 31442138 (+) True LOC110486119
XR_002468036.2 mRNA upstream 239369 31267822 ~ 31270431 (+) True LOC110486114
XM_021557474.2 mRNA upstream 259718 31243865 ~ 31250082 (+) False LOC110486110
XM_021557475.2 mRNA upstream 259718 31244780 ~ 31250082 (+) True LOC110486110
XM_021557469.2 mRNA upstream 266673 31240900 ~ 31243127 (+) True LOC110486108
XM_021557499.2 mRNA downstream 129050 31642382 ~ 31649841 (+) True LOC110486128
XM_021557500.2 mRNA downstream 152908 31666240 ~ 31673890 (+) True LOC110486130
XM_021557502.2 mRNA downstream 171142 31684474 ~ 31690205 (+) True LOC110486131
XR_002468281.2 mRNA downstream 178201 31691533 ~ 31692268 (+) True LOC110487528
XM_036939718.1 mRNA downstream 188632 31701964 ~ 31709740 (+) False il2rb2
TU1327390 other upstream 390123 31114311 ~ 31119677 (+) True LOC110486104
TU1326020 other upstream 1678504 29830754 ~ 29831296 (+) True G1162753
TU1325585 other upstream 2014898 29494362 ~ 29494902 (+) True G1162364
TU1325047 other upstream 2138853 29364052 ~ 29370947 (+) True si:ch211-126j24.1
TU1325076 other upstream 2210144 29298758 ~ 29299656 (+) True G1161908
TU1328699 other downstream 488419 32001751 ~ 32110733 (+) False LOC110486134
TU1329495 other downstream 1201924 32715256 ~ 32722462 (+) True ifn2
TU1329888 other downstream 1715781 33229113 ~ 33230483 (+) True LOC110486146
TU1330025 other downstream 1726621 33239953 ~ 33249208 (+) False G1166318
TU1330567 other downstream 2277308 33790640 ~ 33803665 (+) True G1166779

Expression Profile