RNA id: XR_005035851.1


Basic Information

Item Value
RNA id XR_005035851.1
length 3931
RNA type mRNA
GC content 0.59
exon number 1
gene id LOC118938644
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 57976168 ~ 57980098 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgacctcagatcagacgagacaacccgctgaatttaagcatattactaagcggaggaaaagaaactaaccaggattccctcagtagcggcgagcgaagagggaagagcccaacaccgaatccctgtccgtctggcgggcacgggaaatgtggtgtatagaagaccgctttgcccggtgtcgatcgggggcctgagtccttctgatcgaggctcagcccgtggacggtgtgaggccggtaacggcccccgtcgcgccggggtccggtcttttcagagtcgggttgcttgggaatgcagcccaaagcgggtggtaaactccatctaaggctaaataccgtcacgagaccgatagacgacaagtaccgtaagggaaagttgaaaagaactttgaagagagagttcaagagggcgtgaaaccgttgagaggtaaacgggtggggtccgcgcagtctgcccggaggattcaactcggcgggtcagggtcggccgttccggtgtggtcggatcccctcgtgggactgatccctggtcgggctcggcccccgccgggcgcatttcctctgtcggtggtgcgccgcgaccggctctgggtcggcttggaagggcttggggcgaaggtggctaccggtttcggccgtgagctttacagcgcccctgctccgtactcgccgctttccggggccgaggacttagtacccgctgcgtcatgtccccctgcgggggggcacggggccccttgcccccggcgcgactgtcaaccgggtcggactgtcctcagtgcgtacccaaccgcgttgcgtcgccagggtagggatcggctcacgtcaactggcgccaggggtcagcggcgatgtcggcaacccacccgacccgtcttgaaacacggaccaaggagtctaacgcatgcgcaagtcagagggttttctccgaacacaccccgtggcgcaatgaaagtgagggccggcgcgtgtcggctgaggtgggatcccgaccctacggggtcgggcgcaccaccggcccgtctggcccgctttgtcggggaggtggagcgtgagcgcatgcgataggacccgaaagatggtgaactatgcctgggcagggcgaagccagaggaaactctggtggaggtccgtagcggtcctgacgtgcaaatcggtcgtccgacctgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaagtttccctcaggatagctggcgctcgaagtctcgcagttttatctggtaaagcgaatgattagaggtcttggggccgaaacgatctcaacctattctcaaactttaaatgggtaagaagcccggctcgctggcttggagccgggcgtggaatgcgagccgcctagtgggccacttttggtaagcagaactggcgctgcgggatgaaccgaacgccgggttaaggcgcccgatgccgacgctcatcagaccccagaaaaggtgttggtcgatatagacagcaggacggtggccatggaagtcggaatccgctaaggagtgtgtaacaactcacctgccgaatcaactagccctgaaaatggatggcgctggagcgtcgggcccatacccggccgtcgctggcaacgagagcctcgagggctatgccgcgacgagtaggagggccgccgcggtgagcacggaagcctagggcgcgggcccgggtggagccgccgcgggtgcagatcttggtggtagtagcaaatattcaaacgagaactttgaaggccgaagtggagaagggttccatgtgaacagcagttgaacatgggtcagtcggtcctaagagatgggcgaacgccgttcggaagggaggggcgatggcctccgtcgcccccggccgatcgaaagggagtcgggttcagatccccgaatccggagtggcggagatgggcgccgcgaggcgtccagtgcggtaacgcgaccgatcccggagaagctggcgggagccccggggagagttctcttttctttgtgaagggcagggcgccctggaatgggttcgccccgagagaggggcccaagccctggaaagcgtcgcggttccggcggcgtccggtgagctctcgctggcccttgaaaatccgggggagagggtgtaaatctcgcgccgggccgtacccatatccgcagcaggtctccaaggtgaacagcctctggcatgttagaacaatgtatgtaagggaagtcggcaagtcagatccgtaacttcgggataaggattggctctaagggctgggtcggtcgggctggggtgcgaagcggggctgggctcgagccgcggctgggggagcagttgctccgcctcctttctctcgccactgctggaagttcgttgtgcggcccatctcgtgggctctcgtttgtggtctcgcaaggggctgcttatgggggttcattggggtggtgtccgtcggcgtcccgaaggtggatcggtgggggtctggttggtggttggcagcggcgactctggacgcgtgccgggcccttctcgcggatctccccagctacggtgctcgctggccccgtttacgcggggtctccggcgggttgcctcggccggcgcctagcagctgacttagaactggtgcggaccaggggaatccgactgtttaattaaaacaaagcatcgcgaaggcccaaggtgggtgatgacgcgatgtgatttctgcccagtgctctgaatgtcaaagtgaagaaattcaatgaagcgcgggtaaacggcgggagtaactatgactctcttaaggtagccaaatgcctcgtcatctaattagtgacgcgcatgaatggatgaacgagattcccactgtccctacctactatctagcgaaaccacagccaagggaacgggcttggcggaatcagcggggaaagaagaccctgttgagcttgactctagtctggcactgtgaagagacatgagaggtgtagaataagtgggaggccccggccgccggtgaaataccactactcttatcgttttttcacttacccggtgaggcggggaggcgagccccgagcgggctctcgcttctggtttcaagcacccggctcgcgtcgggtgcgacccgctccggggacagtggcaggtggggagtttgactggggcggtacacctgtcaaacggtaacgcaggtgtcctaaggcgagctcagggaggacagaaacctcccgtggagcagaagggcaaaagctcgcttgatcttgattttcagtatgaatacagaccgtgaaagcggggcctcacgatccttctgactttttgggttttaagcaggaggtgtcagaaaagttaccacagggataactggcttgtggcggccaagcgttcatagcgacgtcgctttttgatccttcgatgtcggctcttcctatcattgtgaagcagaattcaccaagcgttggattgttcacccactaatagggaacgtgagctgggtttagaccgtcgtgagacaggttagttttaccctactgatgatgtgttgttgcaatagtaatcctgctcagtacgagaggaaccgcaggttcagacatttggtgtatgtgcttggctgaggagccaatggtgcgaagctaccatctgtgggattatgactgaacgcctctaagtcagaatcccccctaaacgtaatgataccgtagcgccgtggagcttcggttggcccgggatagcctgcctcttttggcaggtgagtagagccgttcgtgacagggtcggggtgcggccgaatgagttgccgcccctctcctgatgcgcaccgcatgtttgtggagaacctggtgctaaatcactcgtagacgacctgattctgggtcagggtttcgtgcgtagcagagcagctcactcgctgcgatctattgaaagtcagccctcgatccaagcttttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1358111 lncRNA downstream 318 57972296 ~ 57975850 (-) True G1190635
TU1358146 lncRNA downstream 11413 57963997 ~ 57964755 (-) True G1190664
TU1358133 lncRNA downstream 36935 57938974 ~ 57939233 (-) True G1190651
TU1358131 lncRNA downstream 40968 57934303 ~ 57935200 (-) True G1190649
TU1358122 lncRNA downstream 50274 57925565 ~ 57925894 (-) True G1190644
TU1358105 lncRNA upstream 2433 57982531 ~ 58002323 (-) True LOC118938642
TU1358149 lncRNA upstream 10832 57990930 ~ 57991686 (-) True LOC118938645
TU1358107 lncRNA upstream 22374 58002472 ~ 58003900 (-) True G1190631
TU1358156 lncRNA upstream 29652 58009750 ~ 58010072 (-) True G1190674
TU1358160 lncRNA upstream 31292 58011390 ~ 58011685 (-) True G1190678
XR_005035847.1 mRNA downstream 6060 57968273 ~ 57970108 (-) True LOC118938640
XR_005035889.1 mRNA downstream 8466 57967549 ~ 57967702 (-) True LOC118938684
XM_036941683.1 mRNA downstream 20555 57897166 ~ 57955613 (-) False LOC110486920
XM_021558802.2 mRNA downstream 127982 57845786 ~ 57848186 (-) False LOC110486935
XM_036941670.1 mRNA downstream 208095 57744990 ~ 57768073 (-) False rfx1a
XR_005035770.1 mRNA upstream 375 57980473 ~ 57980626 (-) True LOC118938561
XR_005035849.1 mRNA upstream 1099 57981197 ~ 57983032 (-) False LOC118938642
LOC118938645 mRNA upstream 8994 57989092 ~ 57994514 (-) False LOC118938645
XR_005035771.1 mRNA upstream 14791 57994889 ~ 57995042 (-) True LOC118938562
XR_005035850.1 mRNA upstream 15515 57995613 ~ 57997448 (-) True LOC118938643
TU1357843 other downstream 269378 57702536 ~ 57706790 (-) True LOC110486915
TU1357845 other downstream 274344 57699251 ~ 57701824 (-) False LOC110486915
TU1357787 other downstream 477013 57495988 ~ 57499155 (-) True G1190405
TU1357558 other downstream 886253 57089171 ~ 57089915 (-) True G1190199
TU1357552 other downstream 890697 57080817 ~ 57085471 (-) True LOC110486894
TU1358103 other upstream 11803 57991901 ~ 57994024 (-) True G1190628
TU1358845 other upstream 607227 58587325 ~ 58588526 (-) True LOC110514412
TU1358844 other upstream 616678 58596776 ~ 58602232 (-) True LOC110486955
TU1358947 other upstream 779625 58759723 ~ 58762086 (-) True G1191298
TU1358988 other upstream 887965 58868063 ~ 58868971 (-) True G1191335

Expression Profile