RNA id: TU1358111


Basic Information

Item Value
RNA id TU1358111
length 3108
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G1190635
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 57972296 ~ 57975850 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtgcacatgggcctttttaggtgaccaggtgcacgacatctattttgggtgaccaggtgcacacgggttacccgggtggtgattaagggcctgtactctcatgccagagagggaggcctgttactggataggtagtgagggcctttaggcctgaaggtccatagttccactgtccttaaggggggcagagcagtcagcctctgtggaggttggctgctctgtccccctttttttttggcccatttttccaatcaccaggcccagagtttgacctttagggatttatgtgttctctcataccaggagagagaggcctgttactggataggtagtgagggcctttaggcctgaaggtccatagtgccactgtccttaaggggggcagagcagtcagcctctgtggaggttggctgctctgtcccccttttttttggcccatttttccaatcaccaggcccagagtttgacctttagggatttatgtgttctctcatgccaggagagagaggcctgttccttgatagggagttagggcctttatgcctgtatgtgtactctcattcacagagatggacatagtgcaatttctgtgatttatttaccatctattttgggttaccagatgcacatttcaaatcaccagttgcacggatgtatatgctcatcaagcagttggctaccttaagagagtcatagttactccctccattcacccgcggtccatattttaatttttgggttaccagatgcacgttttcaatcaccaggtgcacggaggattaatagcaatctgcatccatcgtgatattttaaaccgtccataaagcactcaaatagggcccccactgagagagggccgtagtgggctactcccctggcgggcatgaaggtcaggtatagctttaaatgcattttgaacagttttataatttttgggtgaccaggtgcacacggtccatttgggtgaccaggtgcacgccggcttttgggtgaccaggtgcacacggttcttttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacatggtccttttgggtgaccaggtgcacatggtcctttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacatggttcttttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacatggtccttttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacatggtccttttgggtgaccaggtgcacatggtcctttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacatggtccttttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacacggtccttttgggtgaccaggtgcacatggtcctttgggtgaccaggtgcacgccggtccttttgggtgaccaggtgcacaagttccatttgggtgaccaggtgcacgcggttcataacagcgcggttatctgctttaatgtccgaggaggggtgcttaagtgtgggtgccctggttcacctggtatgcgaggttgtggaggtggggggggtcccctgctggtatcatccccgaaatagaggggtgatacccgggtggtgagtaagggcctacaagcctggaggtcaatagctccagggggtaagctctactgtcatgtccgtaaatagagtggtgttacccgggttttgaaccatattttaatttttgggttaccagatgcacacgggtcttttggaaaacaatcacaatctgcatccatcgtaatatcttaaactgtatataaatcacctaaggacgggcctgaccgagagagggccgtagtagggtactcccctagcgggctatatcaatagaatgaccggtaaaatgatttaaaacagttttacaatttttgggttaccagatgcacacgggtcttttggaaaacaatcacaatctgcatccatcgtaatatttaaaactgtccataaagcactgaaggacgggcctgaccgagagagggctgtagtagggtactcccctagcgggctatatcaatagaatgaccggtaaaatgatttaaaacccttttataatttttgggttaccagatgcacgttttcaatcaccagttgcacggaggattaatagcaatctgcatccatcgtgatttcttaaagtgtctaaaaagcactcaaggacggccctgacagagagagggccgtagtggggcactcccctagcgggctatatcaatagaatgacgggtaaaagtatttaaaaccgttttataatttttgggttaccagatgcacgttttcaatcaccaggtgcacggaggaaaatgagcatttgcatccatagtcatgtcttaaaccgtccataaagcactcttggccggccccggcagagagagaaagagatggtggaaaaaaaaaaaaatcatcatcagaccttccataaataattcgggccggcccccattgctaaaggtccgtagtagggtgcgccataagcggacatgaatagatggaacaccgctaaccgcatagagaaccgtgttttgggtgaccaggtgcacgttttcaatcaccagttgcacattttcaatcaccagttgcacggaggattaatagcaatctgcatccatcgcgatttcttaaagtgtctataaagcactcaggacggccccgaccgagacagggccttagtggggtgctcccatagcgggcaacaatgagaggggtgcctttaaattcattttgaaccatatttgaaattttgggttaccagatgcacgttttcaatcaccagttgcacggaggattaatagcaatctgcatccatcgtgatttcttaaagtgtctaaaaagcactcaaggacggccctgacagagagagggccgtagtggggcactcccctagcgggctatatcaatagaatgacgggtaaaagtattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1358146 lncRNA downstream 7541 57963997 ~ 57964755 (-) True G1190664
TU1358133 lncRNA downstream 33063 57938974 ~ 57939233 (-) True G1190651
TU1358131 lncRNA downstream 37096 57934303 ~ 57935200 (-) True G1190649
TU1358122 lncRNA downstream 46402 57925565 ~ 57925894 (-) True G1190644
TU1358085 lncRNA downstream 59385 57911792 ~ 57912911 (-) True LOC110486920
TU1358096 lncRNA upstream 399 57976249 ~ 57979740 (-) False G1190628
TU1358105 lncRNA upstream 6681 57982531 ~ 58002323 (-) True LOC118938642
TU1358149 lncRNA upstream 15080 57990930 ~ 57991686 (-) True LOC118938645
TU1358107 lncRNA upstream 26622 58002472 ~ 58003900 (-) True G1190631
TU1358156 lncRNA upstream 33900 58009750 ~ 58010072 (-) True G1190674
XR_005035847.1 mRNA downstream 2188 57968273 ~ 57970108 (-) True LOC118938640
XR_005035889.1 mRNA downstream 4594 57967549 ~ 57967702 (-) True LOC118938684
XM_036941683.1 mRNA downstream 16683 57897166 ~ 57955613 (-) False LOC110486920
XM_021558802.2 mRNA downstream 124110 57845786 ~ 57848186 (-) False LOC110486935
XM_036941670.1 mRNA downstream 204223 57744990 ~ 57768073 (-) False rfx1a
XR_005035851.1 mRNA upstream 318 57976168 ~ 57980098 (-) True LOC118938644
XR_005035770.1 mRNA upstream 4623 57980473 ~ 57980626 (-) True LOC118938561
XR_005035849.1 mRNA upstream 5347 57981197 ~ 57983032 (-) False LOC118938642
LOC118938645 mRNA upstream 13242 57989092 ~ 57994514 (-) False LOC118938645
XR_005035771.1 mRNA upstream 19039 57994889 ~ 57995042 (-) True LOC118938562
TU1357843 other downstream 265506 57702536 ~ 57706790 (-) True LOC110486915
TU1357845 other downstream 270472 57699251 ~ 57701824 (-) False LOC110486915
TU1357787 other downstream 473141 57495988 ~ 57499155 (-) True G1190405
TU1357558 other downstream 882381 57089171 ~ 57089915 (-) True G1190199
TU1357552 other downstream 886825 57080817 ~ 57085471 (-) True LOC110486894
TU1358103 other upstream 16051 57991901 ~ 57994024 (-) True G1190628
TU1358845 other upstream 611475 58587325 ~ 58588526 (-) True LOC110514412
TU1358844 other upstream 620926 58596776 ~ 58602232 (-) True LOC110486955
TU1358947 other upstream 783873 58759723 ~ 58762086 (-) True G1191298
TU1358988 other upstream 892213 58868063 ~ 58868971 (-) True G1191335

Expression Profile