RNA id: LOC118938645


Basic Information

Item Value
RNA id LOC118938645
length 5423
RNA type mRNA
GC content 0.55
exon number 1
gene id LOC118938645
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 57989092 ~ 57994514 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgacctcagatcagacgagacaacccgctgaatttaagcatattactaagcggaggaaaagaaactaaccaggattccctcagtagcggcgagcgaagagggaagagcccaacaccgaatccctgtccgtctggcgggcacgggaaatgtggtgtatagaagaccgctttgcccggtgtcgatcgggggcctgagtccttctgatcgaggctcagcccgtggacggtgtgaggccggtaacggcccccgtcgcgccggggtccggtcttttcagagtcgggttgcttgggaatgcagcccaaagcgggtggtaaactccatctaaggctaaataccgtcacgagaccgatagacgacaagtaccgtaagggaaagttgaaaagaactttgaagagagagttcaagagggcgtgaaaccgttgagaggtaaacgggtggggtccgcgcagtctgcccggaggattcaactcggcgggtcagggtcggccgttccggtgtggtcggatcccctcgtgggactgatccctggtcgggctcggcccccgccgggcgcatttcctctgtcggtggtgcgccgcgaccggctctgggtcggcttggaagggcttggggcgaaggtggctaccggtttcggccgtgagctttacagcgcccctgctccgtactcgccgctttccggggccgaggacttagtacccgctgcgtcatgtccccctgcgggggggcacggggccccttgcccccggcgcgactgtcaaccgggtcggactgtcctcagtgcgtacccaaccgcgttgcgtcgccagggtagggatcggctcacgtcaactggcgccaggggtcagcggcgatgtcggcaacccacccgacccgtcttgaaacacggaccaaggagtctaacgcatgcgcaagtcagagggttttctccgaacacaccccgtggcgcaatgaaagtgagggccggcgcgtgtcggctgaggtgggatcccgaccctacggggtcgggcgcaccaccggcccgtctcgcccgctttgtcggggaggtggagcgtgagcgcatgcgataggacccgaaagatggtgaactatgcctgggcagggcgaagccagaggaaactctggtggaggtccgtagcggtcctgacgtgcaaatcggtcgtccgacctgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaagtttccctcaggatagctggcgctcgaagtctcgcagttttatctggtaaagcgaatgattagaggtcttggggccgaaacgatctcaacctattctcaaactttaaatgggtaagaagcccggctcgctggcttggagccgggcgtggaatgcgagccgcctagtgggccacttttggtaagcagaactggcgctgcgggatgaaccgaacgccgggttaaggcgcccgatgccgacgctcatcagaccccagaaaaggtgttggtcgatatagacagcaggacggtggccatggaagtcggaatccgctaaggagtgtgtaacaactcacctgccgaatcaactagccctgaaaatggatggcgctggagcgtcgggcccatacccggccgtcgctggcaacgagagcctcgagggctatgccgcgacgagtaggagggccgccgcggtgagcacggaagcctagggcgcgggcccgggtggagccgccgcgggtgcagatcttggtggtagtagcaaatattcaaacgagaactttgaaggccgaagtggagaagggttccatgtgaacagcagttgaacatgggtcagtcggtcctaagagatgggcgaacgccgttcggaagggaggggcgatggcctccgtcgcccccggccgatcgaaagggagtcgggttcagatccccgaatccggagtggcggagatgggcgccgcgaggcgtccagtgcggtaacgcgaccgatcccggagaagctggcgggagccccggggagagttctcttttctttgtgaagggcagggcgccctggaatgggttcgccccgagagaggggcccaagccctggaaagcgtcgcggttccggcggcgtccggtgagctctcgctggcccttgaaaatccgggggagagggtgtaaatctcgcgccgggccgtacccatatccgcagcaggtctccaaggtgaacagcctctggcatgttagaacaatgtatgtaagggaagtcggcaagtcagatccgtaacttcgggataaggattggctctaagggctgggtcggtcgggctggggtgcgaagcggggctgggctcgagccgcggctgggggagcagttgctccgcctcctttctctcgccactgctggaagttcgttgtgcggcccatctcgtgggctctcgtttgtggtctcgcaaggggctgcttatgggggttcattggggtggtgtccgtcggcgtcccgaaggtggatcggtgggggtctggttggtggttggcagcggcgactctggacgcgtgccgggcccttctcgcggatctccccagctacggtgctcgctggccccgtttacgcggggtctccggcgggttgcctcggccggcgcctagcagctgacttagaactggtgcggaccaggggaatccgactgtttaattaaaacaaagcatcgcgaaggcccaaggtgggtgatgacgcgatgtgatttctgcccagtgttCGATGTCAGCCCCGGACTCGAGGGGCGGATACGAACTCGGGAAGAGGGGCAGTCGAAGAGAGGGCGCTACCCAAGTCGAAATCCACCCCTGTAGTGGGGAGTGGAAAACAGAATTGCCATCTCTGGCGGGTTAGCGCGGTGAGGTAAGGGAGGGGCCCTCTAGTGGGGCTCCTTCAACCCCTACCCGTGCGACACCCGACAGAGGTGGCTGTTTTGCTGCAGTCTCCATCTCTGGCGGGTTAGCACGGTGAGGTAAGGGAGGGGCCCTCTAGTAGGGCTCCTTCAACCCCTACCCGTGCGACACCCGACAGAGGTGGCTATTTTACTGAAACCTTGCAAGGCAGTGCAAGGAGAAATGAATTGGAAGCCTAAAGAAGGGTAACCATTCAGTGAGAGAGAAGGATCCCAGACGCAACTGGGTAGGGAGGTCCAAGACACTGGGAACGGCTGACTAAGCGTTCTGCGGTGGCAGTCTGATCACAGATAGCTGTGATGTAACAAATATAAATTTGCGTTCCCTGCTTGCTTGGGCAGCTCTGAACCGCGTGGTTCGAATCGAACGCCACCTGTCATGAGTGAACATTAAATGAGGATGGCCTGTGTCATGCGGTTATGTACTACCAGGCCTCAGGCTAGCCTGAGGCGGGACTCTACACGTTGGGGTGGGAGCTCTCTCCACGCTCTTCGGAGCATGAAGTGGGATGGCATGCGACTGGCCATGAAGCTGACACTACCAGGCCTCAGGCATGCCTGAGAGCGGGACCTCATGCATTTATGGGTGTTTGTCCCCCTTACGTTCGGAGACTCACGACAGAGAACCCAATAGGCCCTGCGGTGATAGGTCATTGCAAGGAGGCTCATGTCTGGGGAGCTAAAGGCATGGGGGTCAGGAGTAAGAAGGTGTCACAGTAGTACTTCTCTATTTAGAGGAGTCGTGGCATTGGAAGTGCAACTGACACCTCCTCGACCAAAGATTTACCGCAGACCCGCCTATAGACAGTCTGGGAACCTACTGAGCGAAGTCACTTGAAGAAATTCGATGAGGCATGCTCACCGGAGCATTCGCACTCAAATCACCTTCGGGGTGACTGTGGCCCCCCCACGCGAGTGGGGAATATCGATAACGCGATGGTAAAGAGTGGTTATCCTATGGCTTGTCTAGGAGGGCTGGCAGGGAAGGAAATGATGATGAAGCAAGCTTCCTCTGCGCCGCCTTGTCCGCTCCCGGTTGATGATTGTGACGAAAGTACATGAGGGTGACGTGGGGGATTTCTCTCCTATGAGTAATGTGCAGGCACTTGATGTCGACCGGGTGTGAAAGCCCTCTGTAAAGACCCTGGGAAGGTGAGCCCTGGGGCTACTGATGCGCAGTATAAAACGCAGAATGTTTGCATAACGATTATGCTGGCGTGACTCAACTGGGCGTCCAGGTGAGGATGTCCGACCGTAGCGTGCATACACTCCTTGTCGTGTCGTAACCCGGCTGTGTTTCTCCACGAAAGTGGGGATACACGACGAAAGGCGGTGTGTTGACGGCGAtcgtaactatgactctcttaaggtagccaaatgcctcgtcatctaattagtgacgcgcatgaatggatgaacgagattcccactgtccctacctactatctagcgaaaccacagccaagggaacgggcttggcggaatcagcggggaaagaagaccctgttgagcttgactctagtctggcactgtgaagagacatgagaggtgtagaataagtgggaggccccggccgccggtgaaataccactactcttatcgttttttcacttacccggtgaggcggggaggcgagccccgagcgggctctcgcttctggtttcaagcacccggctcgcgtcgggtgcgacccgctccggggacagtggcaggtggggagtttgactggggcggtacacctgtcaaacggtaacgcaggtgtcctaaggcgagctcagggaggacagaaacctcccgtggagcagaagggcaaaagctcgcttgatcttgattttcagtatgaatacagaccgtgaaagcggggcctcacgatccttctgactttttgggttttaagcaggaggtgtcagaaaagttaccacagggataactggcttgtggcggccaagcgttcatagcgacgtcgctttttgatccttcgatgtcggctcttcctatcattgtgaagcagaattcaccaagcgttggattgttcacccactaatagggaacgtgagctgggtttagaccgtcgtgagacaggttagttttaccctactgatgatgtgttgttgcaatagtaatcctgctcagtacgagaggaaccgcaggttcagacatttggtgtatgtgcttggctgaggagccaatggtgcgaagctaccatctgtgggattatgactgaacgcctctaagtcagaatcccccctaaacgtaatgataccgtagcgccgtggagcttcggttggcccgggatagcctgcctcttttggcaggtgagtagagccgttcgtgacagggtcggggtgcggccgaatgagttgccgcccctctcctgatgcgcaccgcatgtttgtggagaacctggtgctaaatcactcgtagacgacctgattctgggtcagggtttcgtgcgtagcagagcagctcactcgctgcgatctattgaaagtcagccctcgatccaagcttttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1358096 lncRNA downstream 9352 57976249 ~ 57979740 (-) False G1190628
TU1358111 lncRNA downstream 13242 57972296 ~ 57975850 (-) True G1190635
TU1358146 lncRNA downstream 24337 57963997 ~ 57964755 (-) True G1190664
TU1358133 lncRNA downstream 49859 57938974 ~ 57939233 (-) True G1190651
TU1358131 lncRNA downstream 53892 57934303 ~ 57935200 (-) True G1190649
TU1358107 lncRNA upstream 7958 58002472 ~ 58003900 (-) True G1190631
TU1358156 lncRNA upstream 15236 58009750 ~ 58010072 (-) True G1190674
TU1358160 lncRNA upstream 16876 58011390 ~ 58011685 (-) True G1190678
TU1358177 lncRNA upstream 52334 58046848 ~ 58047083 (-) True G1190693
TU1358178 lncRNA upstream 52600 58047114 ~ 58047427 (-) True G1190694
XR_005035849.1 mRNA downstream 6060 57981197 ~ 57983032 (-) False LOC118938642
XR_005035770.1 mRNA downstream 8466 57980473 ~ 57980626 (-) True LOC118938561
XR_005035851.1 mRNA downstream 8994 57976168 ~ 57980098 (-) True LOC118938644
XR_005035847.1 mRNA downstream 18984 57968273 ~ 57970108 (-) True LOC118938640
XR_005035889.1 mRNA downstream 21390 57967549 ~ 57967702 (-) True LOC118938684
XR_005035771.1 mRNA upstream 375 57994889 ~ 57995042 (-) True LOC118938562
XR_005035850.1 mRNA upstream 1099 57995613 ~ 57997448 (-) True LOC118938643
XM_036939773.1 mRNA upstream 247993 58242507 ~ 58274289 (-) True LOC110486937
XM_036941702.1 mRNA upstream 358213 58352727 ~ 58371333 (-) True iqck
XM_036941703.1 mRNA upstream 378155 58372669 ~ 58419589 (-) False LOC110486946
TU1357843 other downstream 282302 57702536 ~ 57706790 (-) True LOC110486915
TU1357845 other downstream 287268 57699251 ~ 57701824 (-) False LOC110486915
TU1357787 other downstream 489937 57495988 ~ 57499155 (-) True G1190405
TU1357558 other downstream 899177 57089171 ~ 57089915 (-) True G1190199
TU1357552 other downstream 903621 57080817 ~ 57085471 (-) True LOC110486894
TU1358845 other upstream 592811 58587325 ~ 58588526 (-) True LOC110514412
TU1358844 other upstream 602262 58596776 ~ 58602232 (-) True LOC110486955
TU1358947 other upstream 765209 58759723 ~ 58762086 (-) True G1191298
TU1358988 other upstream 873549 58868063 ~ 58868971 (-) True G1191335
TU1359914 other upstream 911639 58906153 ~ 58909232 (-) True G1192082

Expression Profile