RNA id: XM_036941703.1


Basic Information

Item Value
RNA id XM_036941703.1
length 5172
RNA type mRNA
GC content 0.53
exon number 24
gene id LOC110486946
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 58372669 ~ 58426053 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGCCGCAGACATAATGCAAGGGAAGGAGTCTGATCGGAGAATGACCATGGATTTCTCTCgcctacacacatacactcctCCACAGTGTGCTCCAGAGAACACAGGATATACCTACTCCCTCAGCTCCAGCTACTCGACTGTGGCCCTAGAGTTTGAGAAGGTGCATCAGATCGCTCCCGTGTTCAACTCGCCCAGGATGTCGCGGCGGAGCCTGCGTCTGCAGACCACTGGCGGTCTCTATGGCAACGACAGCCTGGCTGACTTCTCCTCCCAGAACCACAGCAGCGGAGGGTCCAGTCAGAGAGAGTCATGgaTGGTGAGGAGCAGAAAGCATCAGCAGCAGTCTGCCTCCAGCACCCTGTCCCTGAACCAGTCCCTGTCCCTGAACCAGTCCCTGTCCCTGaaccagtccctgcccctgaaccAGACGCCACGCaagaccctctccttctccactagCAACACTCCCTCTACGGGCTGCACCACTGCCAGCGAtgcctccctgctatcctccatCTTGGACCAGTCCAGCCTCCGTCAGCGATccaacaccactactaccacagaCGGCTACTGGGGTTCAGATCAGGATACCAGTCTGAAAGGGAGGAGTTCAAGGACGGACCACAGCTCAACGGGTGCGAACGGCGGCGTCAACACTGTGTCGCACAGCCACGCCATGGTCGCCAACGGTTACATCTGTAAAGACTGTTCCATACACTCTGAGAGGAAAGAATCTCTCACCAcatactcctcctcttcctcgtctcAGGCTGCCTCTGCAGCAGCAGCTGCCGccaccttctcctcttcctcgtctCAGGCTGCCTCTGCAGCAGCAGCTGCCGCCTCCCTTTCATCCTCTTCCTCGTCTCAGGCTGCCTCTGCTGCAGTAGCTGCTGCCGCCATCTCATCATCATCAGCCTCATCCTCCAGTTTATACAGCACGGTCAAGAATCAGAGGAGCAAGACAGGTCTCCTGGTGTCAGTCTCTAACACGTGTGTCCACTACAGCAGACGAGCCCTGACCCCCATAGTGTCCCTGATGACACTGCTCTTCCAGAACATTCTGTGGCTGGGCACAAGAGCCAGGAGCCACTCAGGCAAAGGTGTCCTGGCGTCCCTATTAGACAGGGCCAGACGGGCTGTCTCCTCCAGCGCGTCCCGTGTCTCTTGGCTCTTTAAGCAGACTACTCTCCACAGGATGATGGGCTACAGGGCCAACGACTACGAAGGCAAAGCTCACTCCAGTTACTGTGGGAGCATGAATGTAAAAGACCACGTGATGGGAGACGGACACCACCACTTTTTAAATGGCTCGTTGTGTGACGACTGTAAAGGGAAGCAGCACCTGGAGACCAACACACTGGtccacagtcacacacagacctccAGAACTCACCGTCTACTGGGGGGTCTGTGGACCCTTATAGTTTACACAGGCTACTGTCTGCTCCAGCCAGGTTACTATGTAGTGAGGGCAGGCCTGGCTCTGGGGTCAGCAGTGGGGTCAGCAGTACGGTCAGTGGCTCAGAGACTGCTGTCAGTGCTGTGTCTAGTCCTGGGAGCTCCAGGTAAAGCAGCCAGGCGGTTGTTGTGGTGTCTGGGGACAGGCTGGTACCAGCTGgtgtctctcatgtctctgttcAACGTCTTCTTCCTGACCCGgTGCCTGCCCAGAATGTGgaagctcctcctcttcctccttcccttcctgaTATTCCTGTggttgtGGTTCTGGGGTCCGTCCAGTTTCCTCTCCTACCTTCCAGCCATAAACCTGACAGAGTGGCGCTCCAGAGTGGTGTCCCCCTTCACCCTCTCATCGTTTATCCTGACCCCTGCCCTTGTTCCCACCCCCGCCACACCACTGGAGCAGACCCCCACAGCAACCCCCGGCCCACAGGCACAGCCAGTCCTTCCCCCCATAGTCACCGTGGACACAGAGGGCCTGGAGCGTCTGGAGCGGGTAGAGCATGGTCTGACCCTGCTGTGGGAGCGGGTGAAGCAGGGGGACCAGAGGCAGGAGCAGCATCACGGGGACACCCTGGCCCAGTACACCCTCCTGAGGGAGCAGCTGGACAGCCAGACGGACAGAGACAACCTGGGTCCCTGGGTCTCTGGCTTGCTGGAGCACAGGATCACCCTGCTGAGAGGAGAGCTGGAGCAGCAGGAGGCCTCACACAGGGCACAGACTGAAGAGCAGAGGGTTCAGCAGCAGCAGAGTCAGGAGACACGGCTAGCTGAGCTGGAGGGGCTGCTGCAGGTCCTCGCTACTAAAACTGAGGCGGTGCAACAGAAACAGGAACAGCagaaggaggagacagaggagacagccaCACCAGCCCCTGCCTCTGTCCGTGTCAGTGTGGGTGTGGACCCGGAGGCCCCTGCTGCTTTGCTGGCGGAGGTGCAGAGGCTGGAGGGGGAGCTGAGTCGGATCAGGGGCGACCTGCAGGGGGTGATGGGATGTCAGGGGAAATGTGAGCAGCTGAACACAATCCAGGAAACAgTGTCCGCCCAGGTGTCCGCCCAGGTGAGGCGGGAGCTGCAGGCCCTGTTCTACGGCTCTGACGACCAGACCCACCAGGGAGAACCAGACATCCCCGAGGGACTCCTCCAGTGGCTGTCGTCGCGCTACGTGAGCGGGGCCGACCTGCAGACCCTCCTGACCAACCTGGAGCTCAGCATCCTGAGGAACGTGTCGCTGCAGCTGGAGCAGAGCAGGGCCGAGGCCCGGACGGAGGCTGAGGCCAGGGCTGCAGTCATCATCACGCAGACCCAGGCTATTACACAGAGTGTCCAACACACCGCCGTGGGCGAGGGACTGTCTGAGGAGcaAGTGCAGCTGATCGTCCAGAATGCCCTGAAACTCTACTCCCAGGATAGGACGGGCCTAGTGGACTACGCCCTGGAGTCTGGAGGCGGTAGCATCCTAAGCACGCGCTGCTCGGAGACGTACGAGACAAAGACGGCCCTCATGAGTCTGTTCAGCGTGCCCCTCTGGTACTTCTCCCAGTCGCCCCGCGTCGCCATCCAGCCTGATGTTTATCCAGGGAACTGCTGGGCGTTTAAAGGTTCTCATGGTTACCTGGTCATCCGGTTGTCCCTGAGGATCCTCCCCACAGCCTTCTGTCTGGAGCACATCCCCAAGGCCCTGTCCCCTACCGGCAACATCGCCAGTGCCCCGCGCAACTTCACTGTCtatGGTCTGGATGATGAGTATCAGGAGGAGGGAAAGCTGTTGGGTCAATACACCTACCAGGAGGACGGAGACTCAATGCAGAACTTCCCTGTCATGGAGAAGAACGAAAGGGCCTTCCAGATCATCGAGGTGcgtgtgctgaccaactgggGTCACCCCGAGTACACCTGCCTCTACCGCTTCAGAGTCCACGGAGAACCACGCATCCAGTGAGGGAGGATGGCGGCCATTTGAACTGCCAGTCAGGATGATATGCATTTCTCTGATATCTGTATATAATACTGGACATATTTTTCTAAATGGAGGGGGCCGGGAAAACCGAGACTGATATAAACGAGTGACTTCAGAAGTATGGGGATGGGTGTTTGATTTATGCTAGAATGTGTCCAAGGGGGTTTTTGTTTTAGTACTGAAATGGTAAAAGAATGAAAGAATGGACTGTAATGAAATGTCAGGGAatgtgaaagagaagagaagCGTGAAGGTAGGAGAAGCTCGGTCCCAGTCCCTCCTCCTTAAACCTGCTCTTGCACTGAATTAGCCCTCCAGGTCAGAACCCTTTGGTTTTTGGGGGAGCGTTTTCCTCTGCCGCTCTCACTCAACCACAGGAGCCTGTGACCTCGAGATGAAATGGACTACACACATCTTTTTATTTCCTTACACATCCTGTCTGATTTGGTTGGTGTTTTAATCAGGTTTTATTTTGGATTTTTCTTTGAAAACCCCTTGTGGATTCTGATGGAATTTCAGGGTCAAAGCCACAGAACTGGATCAAAGCCACAGAACTGGGCCTAAATGACGTTTTATATAGGCCTCACACACACTGGGCCTACGTGACACTGTATAGGCCTCTCTTCTCTTGATACAAAGCTACTTCTCTCTGCTGCTGTTGGTTGGTCAGTCTGCAGGGCCAGCTAACATGGTCAGTGGACACTCGCaagacacagacagaactactacCGTTCTTTGGACTACAACACTCCTGTTCGCCATGACTTTATGCATCCACACAGCCGTCAAAACTAAGCTCTATCTCTCCTATAGAAAACGTTACACACATGGACAGACTTTTAATGAGTTGATACATGTGTATCTCAAGTTAAGATTTGGTCTTGAAGCTCTGTGGAGTCCAGACTGGAGTGTTAATGAGAGTGAGACTGACAGCCAATGGTTTGGCTTCTTCTAGTGCAGCGAGCCAATGGTTTGGCTGCTCCTTGCACAGTCATTATAACATCCTCTACTAGAGCTTCTACTCCGGAAAAggggatccttgggatgtcccaaCTCTGACATCACCCCATTTGaagttgaggttagggttagggttaggatagagGTTAGAGTTTAGGGTAGGGccatcccaaggatcccggatagcgCATAATCCCTTCTACTCCCTGCAGGAATGTAATCTGTATATTTCATTGTTAATAGTTGGTCCTTTTTTAAGAATGAGATTTTATCAGTGTTGCTTTATGAAAAAAGGGTACACCTTGTCAATATTTCTATTATTTGTATTACCCATTGTAAGTGTAATTATGTTTGACTTTTACCATTTGTAGTTGAGAATAATGACAAATGATGCCTGTAAATGAAATGTGTGTTGCACAAGTCCTCACAATTTGTGGAAAAAACTAGATGGGGTAGCTATAAATTAGTTTTGTGTGGACCAGAAAGTCTAAATGTACAAAAAATTATTTCATGATCCTATTTATTTTTAAGATAATTAGTTACTGCAAGATAGGACTGCAATGTATTTTTATCAAAAAGCTTTTCAGTGCATTTTGGAAACATCTTGGGACAGTACAGATttgtttttcatttgttttttcgTTTATTTTGTCGCTGCTCTCATCCTGAGGTAGCTAAACCGCATTTAGAATATATTCCTAAAGAATTACATTTGGAGAGCTTTTGGTGCATGTGATATTTTACCTAATAAAGACTATTGGTTTTTTATTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1358525 lncRNA downstream 820 58371585 ~ 58371849 (-) True G1190964
TU1358514 lncRNA downstream 17659 58354342 ~ 58355010 (-) True G1190956
TU1358512 lncRNA downstream 21373 58350599 ~ 58351296 (-) True G1190955
TU1358503 lncRNA downstream 25126 58345182 ~ 58347543 (-) True G1190951
TU1358459 lncRNA downstream 58546 58274474 ~ 58314123 (-) True G1190920
TU1358807 lncRNA upstream 27129 58446718 ~ 58447869 (-) False G1191186
TU1358808 lncRNA upstream 27129 58446718 ~ 58447869 (-) True G1191186
TU1358787 lncRNA upstream 34762 58454351 ~ 58507361 (-) True G1191166
TU1358809 lncRNA upstream 90952 58510541 ~ 58511423 (-) False G1191187
TU1358810 lncRNA upstream 90952 58510541 ~ 58511423 (-) True G1191187
XM_036941702.1 mRNA downstream 1336 58352727 ~ 58371333 (-) True iqck
XM_036939773.1 mRNA downstream 98380 58242507 ~ 58274289 (-) True LOC110486937
XR_005035850.1 mRNA downstream 375221 57995613 ~ 57997448 (-) True LOC118938643
XR_005035771.1 mRNA downstream 377627 57994889 ~ 57995042 (-) True LOC118938562
LOC118938645 mRNA downstream 378155 57989092 ~ 57994514 (-) False LOC118938645
XM_036941713.1 mRNA upstream 34754 58454343 ~ 58499962 (-) False LOC110538558
XM_036941715.1 mRNA upstream 34754 58454343 ~ 58499962 (-) False LOC110538558
XM_036941714.1 mRNA upstream 34754 58454343 ~ 58499963 (-) False LOC110538558
XR_005035615.1 mRNA upstream 40657 58460246 ~ 58499967 (-) True LOC110538558
XR_005035616.1 mRNA upstream 85161 58504750 ~ 58507829 (-) True LOC110538556
TU1358104 other downstream 378645 57966137 ~ 57994024 (-) False G1190628
TU1358103 other downstream 378645 57991901 ~ 57994024 (-) True G1190628
TU1357843 other downstream 665879 57702536 ~ 57706790 (-) True LOC110486915
TU1357845 other downstream 670845 57699251 ~ 57701824 (-) False LOC110486915
TU1357787 other downstream 873514 57495988 ~ 57499155 (-) True G1190405
TU1358845 other upstream 167736 58587325 ~ 58588526 (-) True LOC110514412
TU1358844 other upstream 177187 58596776 ~ 58602232 (-) True LOC110486955
TU1358947 other upstream 340134 58759723 ~ 58762086 (-) True G1191298
TU1358988 other upstream 448474 58868063 ~ 58868971 (-) True G1191335
TU1359914 other upstream 486564 58906153 ~ 58909232 (-) True G1192082

Expression Profile