RNA id: TU1322269


Basic Information

Item Value
RNA id TU1322269
length 363
lncRNA type read_through
GC content 0.34
exon number 2
gene id G1159469
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 27846124 ~ 27919990 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaatgaatgagaattatgattttgtaatagtatgaatggtattgattgtaataaattattttaaccacCTTTTTGATTtacttcctgtctttaagtttggtgtgtgttttccttatgtttgcctcttcttgggaagatttagtgggtctcatggtgagtgtcttttaggtcccagttgttgttactagtcgattttcagtggacacccccatagtgtctATCAGAGCCCCTCCTAAAAAACAAGCTTGTATTTTGGGTTGGATATTGCATCCAATTCATATTTTAATCAATGGCATTTCCTTAGACTGTTCATTAGTCTTTCAGTTGTTTTTCTTCTGTTAATTTTCATTGTTTTTTTCCTAC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1321074 lncRNA upstream 31139 27814382 ~ 27814985 (+) True G1158371
TU1321053 lncRNA upstream 35090 27810093 ~ 27811034 (+) True G1158351
TU1321042 lncRNA upstream 44351 27800660 ~ 27801773 (+) True G1158343
TU1322236 lncRNA upstream 59458 27781056 ~ 27786666 (+) True G1159437
TU1322231 lncRNA upstream 61980 27778508 ~ 27784144 (+) True G1159434
TU1322357 lncRNA downstream 105065 28025055 ~ 28077035 (+) False G1159550
TU1322354 lncRNA downstream 126037 28046027 ~ 28057271 (+) True G1159548
TU1322358 lncRNA downstream 138392 28058382 ~ 28077035 (+) True G1159550
TU1322484 lncRNA downstream 278245 28198235 ~ 28198615 (+) True G1159667
TU1322470 lncRNA downstream 282695 28202685 ~ 28203249 (+) True G1159656
XM_036939731.1 mRNA upstream 57551 27768154 ~ 27788573 (+) False LOC110485129
XR_005035731.1 mRNA upstream 121707 27722180 ~ 27724417 (+) True LOC118938453
XM_036942405.1 mRNA upstream 215354 27624021 ~ 27630770 (+) False LOC118938440
XR_005035725.1 mRNA upstream 301431 27539872 ~ 27544693 (+) False LOC118938450
XM_036940699.1 mRNA downstream 24466 27944456 ~ 27950411 (+) True LOC118938251
XM_021559329.2 mRNA downstream 104987 28024977 ~ 28035081 (+) True LOC110487397
XR_005035510.1 mRNA downstream 141776 28061766 ~ 28064668 (+) True LOC118938252
LOC110487371 mRNA downstream 154979 28074969 ~ 28077602 (+) True LOC110487371
XM_021559289.2 mRNA downstream 260794 28180784 ~ 28201594 (+) True LOC110487363
TU1322233 other upstream 59959 27780222 ~ 27786165 (+) False G1159435
TU1322234 other upstream 59959 27780222 ~ 27786165 (+) True G1159435
TU1322229 other upstream 63774 27776572 ~ 27782350 (+) False LOC110485129
TU1322230 other upstream 63774 27776572 ~ 27782350 (+) True LOC110485129
TU1322228 other upstream 64149 27776119 ~ 27781975 (+) False LOC110485129
TU1322442 other downstream 199675 28119665 ~ 28125638 (+) True G1159631
TU1322524 other downstream 332540 28252530 ~ 28257974 (+) True G1159684
TU1322364 other downstream 418995 28338985 ~ 28698821 (+) True LOC110513252
TU1322370 other downstream 552686 28472676 ~ 28499206 (+) True LOC110487355
TU1322806 other downstream 898744 28818734 ~ 28819448 (+) True G1159924

Expression Profile