RNA id: TCONS_00042809


Basic Information

Item Value
RNA id TCONS_00042809
length 1960
RNA type mRNA
GC content 0.48
exon number 6
gene id XLOC_021563
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 16814968 ~ 16823262 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aagcaaaaagtACACAATGCTCAGCGAGTGACTCATGTTGTTGTGCACAGATAACCTGTAAACCTGTTCAAAAACTGATATTTTCCTGTTCCCAGTGTGTTCTCAGGTGTGATGCCAGATGTTCCTCTAACTGTGGTCGAGGAGATCTTGCTGAATCTGCCTGCTCATCATGTGGTTAACGAATGTCGTCTGGTGTGTCCTGAGTGGAAAGAGCTGGTGGACAGTGCTGCACACTGGAGAGAGCGCTGTATGAGAGAGGGGATTCAGCCCTGTGATGGCTCCAGACCACCAGTGGACTGGTGtcagttttattttataactAAGAAACGACGTAACCTGATCAAGAATCCAGTAGCTGATGATAAATTTCAAGGATGGGAGATTGTCGAGAATGGAGGTGACCTCTGGAGCATCGAAAACAGTAGGACACCGTTACCAGACAAGACAGCCACCAAATGTTTTGTAACATCTTATAGGTTGTGTTTGAAGCAACAGCTGATTGATTTGCAGAAAGAAGGCTACAGTGCTGCTTTCATGGATCATCTGCAACCTCACATCAAAATCTCAGACTGGTATGGACCACGTTATGATTGTGGATGTGAGTATCAGATCTGTGTGGAGTTGCTTGGTCAGAATAAGAACCCCATCAGTGTCTTTCAGCCTGAGAAAGTGTTCATTCAAGCGTGGACTGATAAGCCGTGGTATCAAATGATTCATGTCTTTAAGAATTACGGACCTGGTGTTCGGTTTATCCGCTTCACTCATGGAGGGAAGGACACTCAGTTCTGGGCAGGCTGCTATGGAATAAGAGTTACTAACAGTAGTGTGGAGATCTGCCCAGCTGCAGAGAGATAGTCATTTcctgtatgatttttttaatactttattctGTCATTCTAACGATGCATGTTTCTATAgcacacaaaacattttaaatgtaaatattagcaTTTCTATGAGTTAAGTCATAGACATACTGTAACGCCACGCCAGCCCTGACTACTGACTCAGCTCTGCTCCCTCTGCAGTCACTTCCTGTTTGTGTAGTATTTCAGTGAGAGCTCAGGCCATGCTTCAGTGCGAAGTATTGCCAGTTCAAACTGCCTTACCAAGCGTTTCCAAGAGACTTTCATGACTGCCTGCCTGTGTATGACTGCCTGCCTGCCTTAATCAAGTACGTTCTCTGTCTTTGCCCTCTTGCTCTGTTTTGGACTGTTTATTGTTGCCTTGAACTTTTGCCTACCTTCTCACCACGTCTTCTGGATTTGCCCCTGTGTTTGTTGATCTGTTTTGGACTGATTGTTGATATACTGaacccagggccggagcaagctgaactgccgctctaggcaaaggacgatcacgccgccctcaaccccaatgtgaaaacgaaagtgaccggttatgaaaatgaagtgaggtgtcgcggacctctattctgccgccctatgcgcggatataactgaggacgcgcgggtgctgagggagggagggaggtgtcgccgacactgctctctctattctgccgccctatgcgcaaaataactgaggacgcgcgggtgtcgcggatcTCTAATCTGCCGCCCTACACGTGGATTTAACTGAGGACACACATGGGTGCTGATGGAGTTGTCGCTGACTGTGCCCTCTCTATTGtgtcgcctatgcgcgaatatatctgaggacgcgggtggtgagggaggtgttgcggacataactgaggacgcgggtggtaaaagggggtgttgcggacgcctctttctctatactgccgccctaggcggccacctaggtcgcctctatggacgcgccggccctgactGAACTTCTGCCTGCACTCTGGATTTGCCCCTGTTTGTTGACTGGATTGGACTGCTTATATTTTGCCTACTTTCTGCCTGTTTACTCACTGATGTCTATGCATAAACCCTTTAATAAAACTTCTGGAATATGGATTCTA

Function

GO:

id name namespace
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0006516 glycoprotein catabolic process biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-53 Predicted to contribute to ubiquitin protein ligase activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; glycoprotein catabolic process; and ubiquitin-dependent ERAD pathway. Predicted to be part of SCF ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to several human genes including FBXO44 (F-box protein 44).

Ensembl:

ensembl_id ENSDART00000143424

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044801 lncRNA upstream 16652 16798100 ~ 16798722 (+) True XLOC_021561
TCONS_00044667 lncRNA upstream 407948 16406558 ~ 16407426 (+) True XLOC_021554
TCONS_00044666 lncRNA upstream 535880 16272565 ~ 16279494 (+) True XLOC_021552
TCONS_00044665 lncRNA upstream 546636 16267497 ~ 16268738 (+) True XLOC_021551
TCONS_00044800 lncRNA upstream 566137 16227564 ~ 16249237 (+) True XLOC_021550
TCONS_00042814 lncRNA downstream 66293 16889152 ~ 16898771 (+) False XLOC_021567
TCONS_00044802 lncRNA downstream 66293 16889152 ~ 16901236 (+) False XLOC_021567
TCONS_00042815 lncRNA downstream 66350 16889209 ~ 16898790 (+) False XLOC_021567
TCONS_00044803 lncRNA downstream 66350 16889209 ~ 16901236 (+) False XLOC_021567
TCONS_00042817 lncRNA downstream 66544 16889403 ~ 16898584 (+) False XLOC_021567
TCONS_00042805 mRNA upstream 3647 16807785 ~ 16811727 (+) False XLOC_021562
TCONS_00042806 mRNA upstream 3647 16807945 ~ 16811727 (+) True XLOC_021562
TCONS_00042804 mRNA upstream 4983 16807209 ~ 16810391 (+) False XLOC_021562
TCONS_00042803 mRNA upstream 27144 16774589 ~ 16788230 (+) True XLOC_021560
TCONS_00042802 mRNA upstream 46130 16760978 ~ 16769244 (+) True XLOC_021559
TCONS_00042810 mRNA downstream 526 16823385 ~ 16854489 (+) False XLOC_021564
TCONS_00042811 mRNA downstream 8204 16831063 ~ 16849515 (+) True XLOC_021564
TCONS_00042813 mRNA downstream 41271 16864130 ~ 16884098 (+) True XLOC_021566
TCONS_00042816 mRNA downstream 66493 16889352 ~ 16910458 (+) False XLOC_021567
TCONS_00042819 mRNA downstream 85153 16908012 ~ 16918191 (+) False XLOC_021567
TCONS_00042792 other upstream 369334 16444961 ~ 16446040 (+) True XLOC_021556
TCONS_00042790 other upstream 458145 16356708 ~ 16357229 (+) True XLOC_021553
TCONS_00042789 other upstream 1063828 15750018 ~ 15751546 (+) True XLOC_021546
TCONS_00042786 other upstream 1462125 15353133 ~ 15353249 (+) True XLOC_021542
TCONS_00042779 other upstream 2344803 14468003 ~ 14470571 (+) True XLOC_021539
TCONS_00042812 other downstream 36058 16858917 ~ 16859033 (+) True XLOC_021565
TCONS_00042818 other downstream 75466 16898325 ~ 16901006 (+) False XLOC_021567
TCONS_00042824 other downstream 114770 16937629 ~ 16945441 (+) True XLOC_021568
TCONS_00042827 other downstream 323456 17146315 ~ 17146991 (+) False XLOC_021571
TCONS_00042828 other downstream 323702 17146561 ~ 17211274 (+) False XLOC_021571

Expression Profile

//