Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00043867 |
| length | 321 |
| RNA type | mRNA |
| GC content | 0.53 |
| exon number | 2 |
| gene id | XLOC_022218 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 15203822 ~ 15330230 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0032836 | glomerular basement membrane development | biological_process |
| GO:0060348 | bone development | biological_process |
| GO:0014846 | esophagus smooth muscle contraction | biological_process |
| GO:0060384 | innervation | biological_process |
| GO:0010669 | epithelial structure maintenance | biological_process |
| GO:0030177 | positive regulation of Wnt signaling pathway | biological_process |
| GO:0002063 | chondrocyte development | biological_process |
| GO:0030201 | heparan sulfate proteoglycan metabolic process | biological_process |
| GO:0035860 | glial cell-derived neurotrophic factor receptor signaling pathway | biological_process |
| GO:0040037 | negative regulation of fibroblast growth factor receptor signaling pathway | biological_process |
| GO:0010575 | positive regulation of vascular endothelial growth factor production | biological_process |
| GO:0048706 | embryonic skeletal system development | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005794 | Golgi apparatus | cellular_component |
| GO:0005795 | Golgi stack | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0009986 | cell surface | cellular_component |
| GO:0008449 | N-acetylglucosamine-6-sulfatase activity | molecular_function |
| GO:0005509 | calcium ion binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0005539 | glycosaminoglycan binding | molecular_function |
| GO:0008484 | sulfuric ester hydrolase activity | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0004065 | arylsulfatase activity | molecular_function |
| GO:0003824 | catalytic activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-775 | Predicted to enable N-acetylglucosamine-6-sulfatase activity and glycosaminoglycan binding activity. Acts upstream of with a positive effect on epithelial structure maintenance. Predicted to be located in Golgi stack and extracellular space. Predicted to be active in cell surface; endoplasmic reticulum; and plasma membrane. Is expressed in several structures, including central nervous system; head; neural rod; segmental plate; and somite. Orthologous to human SULF2 (sulfatase 2). |
| ensembl_id | ENSDART00000143635 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00043858 | lncRNA | downstream | 293655 | 14910108 ~ 14990921 (-) | False | XLOC_022214 |
| TCONS_00043857 | lncRNA | downstream | 293655 | 14910108 ~ 14990921 (-) | True | XLOC_022214 |
| TCONS_00044975 | lncRNA | downstream | 417440 | 14833132 ~ 14867136 (-) | False | XLOC_022214 |
| TCONS_00044974 | lncRNA | downstream | 425974 | 14833132 ~ 14858602 (-) | False | XLOC_022214 |
| TCONS_00044718 | lncRNA | upstream | 102183 | 15432413 ~ 15563597 (-) | True | XLOC_022219 |
| TCONS_00044719 | lncRNA | upstream | 360301 | 15690531 ~ 15697049 (-) | True | XLOC_022220 |
| TCONS_00044976 | lncRNA | upstream | 366297 | 15696527 ~ 15764287 (-) | False | XLOC_022221 |
| TCONS_00044720 | lncRNA | upstream | 417135 | 15747365 ~ 15764318 (-) | True | XLOC_022221 |
| TCONS_00044977 | lncRNA | upstream | 1152842 | 16483072 ~ 16485615 (-) | False | XLOC_022225 |
| TCONS_00043865 | mRNA | downstream | 67922 | 15205670 ~ 15216654 (-) | False | XLOC_022218 |
| TCONS_00043861 | mRNA | downstream | 193794 | 15046544 ~ 15090782 (-) | False | XLOC_022216 |
| TCONS_00043862 | mRNA | downstream | 196260 | 15048052 ~ 15088316 (-) | True | XLOC_022216 |
| TCONS_00043859 | mRNA | downstream | 247787 | 14992800 ~ 15036789 (-) | False | XLOC_022215 |
| TCONS_00043856 | mRNA | downstream | 293711 | 14861687 ~ 14990865 (-) | False | XLOC_022214 |
| TCONS_00043868 | mRNA | upstream | 520708 | 15850938 ~ 15878879 (-) | True | XLOC_022222 |
| TCONS_00043869 | mRNA | upstream | 569463 | 15899693 ~ 15916391 (-) | False | XLOC_022223 |
| TCONS_00043870 | mRNA | upstream | 569743 | 15899973 ~ 15916391 (-) | False | XLOC_022223 |
| TCONS_00043871 | mRNA | upstream | 570078 | 15900308 ~ 15916316 (-) | True | XLOC_022223 |
| TCONS_00043873 | mRNA | upstream | 1149259 | 16479489 ~ 16484383 (-) | False | XLOC_022225 |
| TCONS_00043863 | other | downstream | 176614 | 15107848 ~ 15107962 (-) | True | XLOC_022217 |
| TCONS_00043860 | other | downstream | 270002 | 15001359 ~ 15014574 (-) | True | XLOC_022215 |
| TCONS_00043855 | other | downstream | 425974 | 14833663 ~ 14858602 (-) | False | XLOC_022214 |
| TCONS_00043841 | other | downstream | 1295094 | 13989364 ~ 13989482 (-) | True | XLOC_022207 |
| TCONS_00043838 | other | downstream | 1409976 | 13861420 ~ 13874600 (-) | True | XLOC_022205 |
| TCONS_00043872 | other | upstream | 615924 | 15946154 ~ 15951976 (-) | True | XLOC_022224 |
| TCONS_00043875 | other | upstream | 1231003 | 16561233 ~ 16562161 (-) | True | XLOC_022227 |
| TCONS_00043880 | other | upstream | 1366180 | 16696410 ~ 16709231 (-) | False | XLOC_022231 |
| TCONS_00043881 | other | upstream | 1366289 | 16696519 ~ 16709164 (-) | True | XLOC_022231 |
| TCONS_00043886 | other | upstream | 1414552 | 16744782 ~ 16746423 (-) | True | XLOC_022233 |
