RNA id: TCONS_00044720


Basic Information

Item Value
RNA id TCONS_00044720
length 1073
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id XLOC_022221
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 15696527 ~ 15764318 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAagattcatatttttgttttgttttagcaaaACGAAGCAAATACGGCCACTGTGGACAGCACTGTGTGTAAAGGGAAAGTTACTTATCTTTAACAGTGTTTATTCACCTTTTTCATAGTTTGTCTTCATTGGGAGAAGGATCACAGGGTCATTTGAGCCGAACACTCTTGGCTTAGAATAATAAACTGGAGGAAGAGGGCCCTCGGGGTAGCCAGAGAAAACAACTCTCTGTTATGGATGAGTCGTGGATGCATGAAGAAGTGTGCATGACGGATGTTACACGCAAAAGTAAAAGGGCGAGCAAAGTTCAACGAGGAAATGCTGGAGGTCTGCTGTCAAATCATACTCGACTAATGCAAACATTCCCAAGACACAGAAGAGAAAGTAAATTGAAAGTTTTCAGTATACAGATGGGGAACCaggagcagaaaaaaaaacagacaatggCAGATTAAATGGAGGTCATGGAACAGTTCGCGAATGGAATATCCAAGGATTTCACCTGAATCTTGGAATGCTCTGGGATGCAGACGGGTAACCAGGAATAGAGAGAATTCAGACACGGAGAACAGACAGGGAACCAGAAGAGACCAGCACTAGGACAGAGACATAGTCACTAGAGAAAACAAGAGGTAAGTAACATAATTAAATGTAACGACACTGACTGTTAGGATAGTCCAGTACCTTATTCAAGATCGAGATATACTAGTTGATTTGATTTGTTCACAAAGGCTATTTAGACTCAACAGCAAAGCAGCAACAGTGACAGGTGTATACAGTACGGTTAAAACTTTTGACAAATCGAATTCGAAGGCTTTTAGATCAAGGTTTAATCATTCTATGAAAGGATTAAATGGACATCAGAGGTGAGCTACCCGGTTTACTGAGCTGCCCATGCACTGCTCTGGAGGGATGCTTTGTTAACCCAAAGGCTTTCTTTATAAAGAATTAATAATTCATGAATGTAACATCACTATTTTAAAGTTAGTTTGTTTGATTGGGTGAGAACTTTTTTTCATACAAAACATTTGACTTTCTGGAAAAGCAGACAAGCTGTAACGTTGTGCTCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044719 lncRNA downstream 50316 15690531 ~ 15697049 (-) True XLOC_022220
TCONS_00044718 lncRNA downstream 183768 15432413 ~ 15563597 (-) True XLOC_022219
TCONS_00043858 lncRNA downstream 756444 14910108 ~ 14990921 (-) False XLOC_022214
TCONS_00043857 lncRNA downstream 756444 14910108 ~ 14990921 (-) True XLOC_022214
TCONS_00044975 lncRNA downstream 880229 14833132 ~ 14867136 (-) False XLOC_022214
TCONS_00044977 lncRNA upstream 718754 16483072 ~ 16485615 (-) False XLOC_022225
TCONS_00044721 lncRNA upstream 718754 16483072 ~ 16485848 (-) True XLOC_022225
TCONS_00044722 lncRNA upstream 752664 16516982 ~ 16518846 (-) True XLOC_022226
TCONS_00044978 lncRNA upstream 879806 16644124 ~ 16648039 (-) True XLOC_022228
TCONS_00044723 lncRNA upstream 929260 16693578 ~ 16709238 (-) False XLOC_022231
TCONS_00043867 mRNA downstream 417135 15284576 ~ 15330230 (-) True XLOC_022218
TCONS_00043864 mRNA downstream 417197 15203822 ~ 15330168 (-) False XLOC_022218
TCONS_00043866 mRNA downstream 462608 15206058 ~ 15284757 (-) False XLOC_022218
TCONS_00043865 mRNA downstream 530711 15205670 ~ 15216654 (-) False XLOC_022218
TCONS_00043862 mRNA downstream 659049 15048052 ~ 15088316 (-) True XLOC_022216
TCONS_00043868 mRNA upstream 86620 15850938 ~ 15878879 (-) True XLOC_022222
TCONS_00043869 mRNA upstream 135375 15899693 ~ 15916391 (-) False XLOC_022223
TCONS_00043870 mRNA upstream 135655 15899973 ~ 15916391 (-) False XLOC_022223
TCONS_00043871 mRNA upstream 135990 15900308 ~ 15916316 (-) True XLOC_022223
TCONS_00043873 mRNA upstream 715171 16479489 ~ 16484383 (-) False XLOC_022225
TCONS_00043863 other downstream 639403 15107848 ~ 15107962 (-) True XLOC_022217
TCONS_00043860 other downstream 732791 15001359 ~ 15014574 (-) True XLOC_022215
TCONS_00043855 other downstream 888763 14833663 ~ 14858602 (-) False XLOC_022214
TCONS_00043841 other downstream 1757883 13989364 ~ 13989482 (-) True XLOC_022207
TCONS_00043838 other downstream 1872765 13861420 ~ 13874600 (-) True XLOC_022205
TCONS_00043872 other upstream 181836 15946154 ~ 15951976 (-) True XLOC_022224
TCONS_00043875 other upstream 796915 16561233 ~ 16562161 (-) True XLOC_022227
TCONS_00043880 other upstream 932092 16696410 ~ 16709231 (-) False XLOC_022231
TCONS_00043881 other upstream 932201 16696519 ~ 16709164 (-) True XLOC_022231
TCONS_00043886 other upstream 980464 16744782 ~ 16746423 (-) True XLOC_022233

Expression Profile

//