RNA id: TCONS_00043876


Basic Information

Item Value
RNA id TCONS_00043876
length 2508
RNA type mRNA
GC content 0.41
exon number 9
gene id XLOC_022229
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 16648621 ~ 16682186 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGCAGGAAGTAAACAGCTACTAAACCACAGAAACTCAGTCACGCACTTTACTCTCGATCACCTCCCCTTCTCAGTGTTCACTTCTGCTCCAACCTAAAGAGGAAAGGGTCCCGTTTACTGTGCTCGGCTTGTTTACATTCCTTCTCATCACATTAAACCCATTTCTTCAGAAGTCGCTTGTTTGAAAGCAGAAAGgATGTCGTTGTACCCATCGCTAGAGGACCTTAAAGTGGACAAGGTCATTAGGGCACAATCCCAGTTTGCTAATGCCACTTCCAGCACTCCAGCCATCACTCAGGGTGCTTACCAGCCACAGCCTGCCACACAGGGGATGCCAAGCTCAActctATACCCCAATCTGGAGGAGCTGGGAGACTACATGGGACTCAGTCTGAACAGCGATGAGGTCCAGAGAAACCTTGCACTGGTCCCAGTGGCTACTCAAGTGGCAGTGCCAAGCTCAGTGGGTGGCATGGTGCGTCCCGTGACTGGAGCAGACATGGGCATCAGGAGGGCAGAGATTCGCCCGGGCCTACGAGAGGTCATTCTCTGCAAAGACCAGGAGGGAAAGGTCGGCCTACGTCTCAGAGATATCGATAATGGAGTGTTTGTGCAGCTGGTGCAAGCCAACTCTCCAGCGGCACTGGCTGGTCTGCGTTTTGGAGATCAGGTTCTGCAGATTAACGGGCAGAACGTTGCTGGCTGGAATTCAGATAAGGCCCATAAAGCTCTGAAGGCAGCAGCAGAACAGCGCATCGAGCTCATCGTTCGAGACAGACCATTCCAGCGCACAATCACCATGCACAAGGATAGCTCTGGCCATGTGGGCTTTATCTTCAAATCTGGGCGCATCACATCTCTAGTGAAGGACGGTTCTGCTGCTCGTAACGGCCTGCTCACCGAACATTACATCTGTGAGATCAACGGCCAGAACGTCATTGGACTCAAGGACACTCAGATTAAGGACATCTTGACCACATCTCCTACTGCCATGACCATCACCATCATGCCTAAATTCATCTTTGAACACATGATCAAGAaGATGTCAGGCGGCCTGCTGAAGTCCTCAATGGATCACTCTGTGCCTGAGGTCTGAACACAGGAGACCATGCAAAAACCCCCTTTCCACAATGCCTACAATCTCTAGCCTTCCCACTGGAGCCTTCAGCACAGGGCTAGCCTATCACTGATTGGATAAGACCTTCTCAATCACATTCATTTagaacatggaaaaaaaactgcCTTTTTCTATTTCACCTGTTGGCCGTTATCATTCTGCCTTCTAGTTCTTGATTCTGTCCTTCCATGTCATCGTGCCATTGTTTAATTACTGTCATATTACATGTTATACAATAATAATCCATCGCCACTCTTgaaatattagcattattatctgattatttttactttagcTGGGAGGCAGGGGGCTAAAAAATGAATCTGAGCTTCCTTTCTGAAAGGCTTCAACACTTCTAACTTCTCTATTCCTCCCACTATGCACAaacactttgtttttgttttttttattcatatttttaacttGTATATGCCAAGACAGCTGTACTCTGCCAGAAAGGATCCTGGGCCAGAATTTATAATACAACAACTCATTTCTTATTGATTCATAATGTTTTTATAGATGTTTAATCTTTCATAATATTCTATCATTATCCTGTAAATGTTAGTGTCTCTAAAATTTATATACGAATGTAACCTGAAGACtgaaattattacaaaaataaatcatcCTGGTGATACCATTGGAATGTAGTCAAcggtaatctttaaaaaaaaaaaaaacgatttaaaACAAATGACTGAAAGTCATCCAAAGTAGCAAGAAAGGCTTTGTTCACCATGCTGTTTAATATAGATCTTTTACAGAGTGATGAAGGTATAACAGCCATGTGTTGCAGTGATGTTTATACATACTCATATCACCATTAAAATATTATTCTACACAAAAAATATTGAGACACTTTGAAACATTGCTGGGCTTACAGGATTGTTTCCATTTTTCTGATTGATCTTATACTGTTAGTTTAGACAATAGACACAATTGAATAGCCAGATGAAGAATGTAAACATCATTGGAATTACCAATtagaaaaacaagcaaacaaacaaacaaactcaaagGTAGCTCTGTAAGATCTAATATTCTAGGCACACTTATAAAATCCTGCTTAACAGATACTGAACTACTGGTGTAAGTCAGCTTTCCAAACATTTCAGTATTCATTCTTTAGGAGTCAACTTACAGAACAAAAGGTGTTGATGATGTACAACAATAACCTAACATTTTAAACATCTGTTTATTGCAGGAGTGagttattaagttattttatttgtgtaatttacTTTGCCTTATATCATTGCAAAAATTTGGAAGAaagacaaatatatttttaatacaatctAAATTATTCTTGTTCCTCTATTAAATGTCATTTCTTACAAAACTTTGATGCTTCAAAACACCCATAAATAAAGGGATCCAAAAATAA

Function

GO:

id name namespace
GO:0042246 tissue regeneration biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0007416 synapse assembly biological_process
GO:0001666 response to hypoxia biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043325 phosphatidylinositol-3,4-bisphosphate binding molecular_function
GO:0045545 syndecan binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3727 Enables phosphatidylinositol-3,4-bisphosphate binding activity and syndecan binding activity. Acts upstream of or within several processes, including epiboly involved in gastrulation with mouth forming second; response to hypoxia; and synapse assembly. Predicted to be active in cytoplasm and plasma membrane. Is expressed in gill; oocyte; and spinal cord. Orthologous to several human genes including SDCBP2 (syndecan binding protein 2).

Ensembl:

ensembl_id ENSDART00000020810

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044978 lncRNA downstream 582 16644124 ~ 16648039 (-) True XLOC_022228
TCONS_00044722 lncRNA downstream 129775 16516982 ~ 16518846 (-) True XLOC_022226
TCONS_00044721 lncRNA downstream 162773 16483072 ~ 16485848 (-) True XLOC_022225
TCONS_00044977 lncRNA downstream 163006 16483072 ~ 16485615 (-) False XLOC_022225
TCONS_00044720 lncRNA downstream 884303 15747365 ~ 15764318 (-) True XLOC_022221
TCONS_00044723 lncRNA upstream 11392 16693578 ~ 16709238 (-) False XLOC_022231
TCONS_00044979 lncRNA upstream 13938 16696124 ~ 16709130 (-) False XLOC_022231
TCONS_00043884 lncRNA upstream 48333 16730519 ~ 16733929 (-) False XLOC_022232
TCONS_00043885 lncRNA upstream 53725 16735911 ~ 16737152 (-) True XLOC_022232
TCONS_00044724 lncRNA upstream 168650 16850836 ~ 16852947 (-) True XLOC_022235
TCONS_00043874 mRNA downstream 163431 16482869 ~ 16485190 (-) False XLOC_022225
TCONS_00043873 mRNA downstream 164238 16479489 ~ 16484383 (-) False XLOC_022225
TCONS_00043869 mRNA downstream 732230 15899693 ~ 15916391 (-) False XLOC_022223
TCONS_00043870 mRNA downstream 732230 15899973 ~ 15916391 (-) False XLOC_022223
TCONS_00043871 mRNA downstream 732305 15900308 ~ 15916316 (-) True XLOC_022223
TCONS_00043879 mRNA upstream 6234 16688420 ~ 16692312 (-) True XLOC_022230
TCONS_00043882 mRNA upstream 37557 16719743 ~ 16734009 (-) False XLOC_022232
TCONS_00043883 mRNA upstream 40812 16722998 ~ 16737161 (-) False XLOC_022232
TCONS_00043887 mRNA upstream 158386 16840572 ~ 16843649 (-) True XLOC_022234
TCONS_00043888 mRNA upstream 273999 16956185 ~ 16960972 (-) True XLOC_022236
TCONS_00043875 other downstream 86460 16561233 ~ 16562161 (-) True XLOC_022227
TCONS_00043872 other downstream 696645 15946154 ~ 15951976 (-) True XLOC_022224
TCONS_00043863 other downstream 1540659 15107848 ~ 15107962 (-) True XLOC_022217
TCONS_00043860 other downstream 1634047 15001359 ~ 15014574 (-) True XLOC_022215
TCONS_00043855 other downstream 1790019 14833663 ~ 14858602 (-) False XLOC_022214
TCONS_00043880 other upstream 14224 16696410 ~ 16709231 (-) False XLOC_022231
TCONS_00043881 other upstream 14333 16696519 ~ 16709164 (-) True XLOC_022231
TCONS_00043886 other upstream 62596 16744782 ~ 16746423 (-) True XLOC_022233
TCONS_00043889 other upstream 279083 16961269 ~ 16964105 (-) False XLOC_022237
TCONS_00043893 other upstream 295744 16977930 ~ 16978915 (-) False XLOC_022237

Expression Profile

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