RNA id: TCONS_00044979


Basic Information

Item Value
RNA id TCONS_00044979
length 1566
lncRNA type inter_gene
GC content 0.46
exon number 15
gene id XLOC_022231
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 16693578 ~ 16709238 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAAAAGCAAACCGATCACAGTATCGCCTGTGCCACGGAAAATGACGACAACCAACCGACTACTTCAACTTTTTCCATTGTTAACAAAGAAGGCATCCCTTTGTCCAGGAAACTGTGCTATGCCATTGGAGGAATGCCTTATCAAATGACTGCAAACGCCAAGGGCTTTTTCATGCAGATCTTTTTACTGGATGTTGTGAAAATGGGAGCATTTTATGCATCCCTCATTCTCTTCCTCGGTCGAGCCTGGGATGCTGTTACAGATCCTCTTATTGGATATGCTGTGAGCAAAAGTGGCCGGACCAGAATTGGCAAACTCATTCCTTGGATTGTGTTCACCATGCCGCTCGGGATCCTGTCATACATCATGCTCTGGTATACCCCACAGGACACCATGTCCCCTGCCTTCAGTTTCAGCTGGTACTTCATATGGTGTTGTTTGTTTGACACCTTTATGAGTTGCTACCATGTGCCATATTCCTCCCTAAACATGTTTCTTGGGGGAAATCAGAAGGATCGAGACTCAGCTACTGGATACAGAATGGGCATGGAAGTGTTCGCCACACTGGCAGGAGCCACCATTCAGGGGCAGATAGTCGGGGTTCACCATGCCAAGAGAACACACGATTGCAGTTTACAGAACAGCACGCAAGAGCTTTCCGGAAACTACACTGGCCCACTGGATGGCATTTCTGACACTTTACAAAATACAAGAAGAGCCTATTTGACTGGCGCACTTGTGTTAGGAATGCTGTACTTTCTGTGCTGCCTCATACTTTTTCTTGGAGTGAAGGAACAGTTGGCGCCTCTGAGTAACCTGGACCGCATAAATGTCCCCTATCTAACCGGAATGAAGATGGTTGTGGGACACACTCCATATGTGCGGCTTGTGTTTGGCTTCCTCTTTTCTTCGCTAGCCTTTCAGATGGCTCAGGGGAATTTTGCCCTCTTCTGTACTCATGCAGCAAATATGGGAGGATATTTCCAGCATCTTGTTCTTATATTACTGACATCAGCGACAATATCCATCCCAATGTGGCAGACAATATTAGTCAAAATAGGAAAGAAGACCACCATATTCATCGGCCTTTCAGTTTATATCCCAGCTCTAACTGTAATATCTCTAGTGAACAGTAATTTACCCGTCTTCATTATTATGTCGGTGATATCTGGCACAAGTCTGGCAGCCCTCTATCTACTCCCTTGGTCGATGCTGCCAGATGTAGTGGATGACTTTAAAGTCAAGAACCCGTTGTGCCAGGATCTAGAGCCACTGTTCTACTCCTGCTATGTGTTCTTTAACAAATTCGGAGGAGGATTGTCTGTTGGAGTGTCCACCTTGGTACTACACTTTGTAGGATACAAGCCTGGAGCTTGTAAACACAATGAAAAGGTCATTTACGCACTCCGGATTCTCTTTGCCCCTGTGCCCATCTGCCTGATTCTCATTGGCATGGTGCTTTTTTACTTCTATCCCATCAATGAAGAGCGACGGCGGAAAATCCAGGAAGCTTTAAGCAAAGCAGGttttgcacaAGATTCTTGGGAAGTTGCAATAGCTGTA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0048468 cell development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0007517 muscle organ development biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:1990399 epithelium regeneration biological_process
GO:0055001 muscle cell development biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0043696 dedifferentiation biological_process
GO:0043697 cell dedifferentiation biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0050793 regulation of developmental process biological_process
GO:0007399 nervous system development biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0060284 regulation of cell development biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0060290 transdifferentiation biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0003310 pancreatic A cell differentiation biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0005901 caveola cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0046983 protein dimerization activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044978 lncRNA downstream 48085 16644124 ~ 16648039 (-) True XLOC_022228
TCONS_00044722 lncRNA downstream 177278 16516982 ~ 16518846 (-) True XLOC_022226
TCONS_00044721 lncRNA downstream 210276 16483072 ~ 16485848 (-) True XLOC_022225
TCONS_00044977 lncRNA downstream 210509 16483072 ~ 16485615 (-) False XLOC_022225
TCONS_00044720 lncRNA downstream 931806 15747365 ~ 15764318 (-) True XLOC_022221
TCONS_00043884 lncRNA upstream 21389 16730519 ~ 16733929 (-) False XLOC_022232
TCONS_00043885 lncRNA upstream 26781 16735911 ~ 16737152 (-) True XLOC_022232
TCONS_00044724 lncRNA upstream 141706 16850836 ~ 16852947 (-) True XLOC_022235
TCONS_00043892 lncRNA upstream 252139 16961269 ~ 16962540 (-) False XLOC_022237
TCONS_00043902 lncRNA upstream 645023 17354153 ~ 17355702 (-) True XLOC_022241
TCONS_00043879 mRNA downstream 3812 16688420 ~ 16692312 (-) True XLOC_022230
TCONS_00043876 mRNA downstream 13938 16648621 ~ 16682186 (-) False XLOC_022229
TCONS_00043878 mRNA downstream 29484 16652084 ~ 16666640 (-) True XLOC_022229
TCONS_00043877 mRNA downstream 29541 16650002 ~ 16666583 (-) False XLOC_022229
TCONS_00043874 mRNA downstream 210934 16482869 ~ 16485190 (-) False XLOC_022225
TCONS_00043882 mRNA upstream 10613 16719743 ~ 16734009 (-) False XLOC_022232
TCONS_00043883 mRNA upstream 13868 16722998 ~ 16737161 (-) False XLOC_022232
TCONS_00043887 mRNA upstream 131442 16840572 ~ 16843649 (-) True XLOC_022234
TCONS_00043888 mRNA upstream 247055 16956185 ~ 16960972 (-) True XLOC_022236
TCONS_00043890 mRNA upstream 252139 16961269 ~ 16981980 (-) False XLOC_022237
TCONS_00043875 other downstream 133963 16561233 ~ 16562161 (-) True XLOC_022227
TCONS_00043872 other downstream 744148 15946154 ~ 15951976 (-) True XLOC_022224
TCONS_00043863 other downstream 1588162 15107848 ~ 15107962 (-) True XLOC_022217
TCONS_00043860 other downstream 1681550 15001359 ~ 15014574 (-) True XLOC_022215
TCONS_00043855 other downstream 1837522 14833663 ~ 14858602 (-) False XLOC_022214
TCONS_00043886 other upstream 35652 16744782 ~ 16746423 (-) True XLOC_022233
TCONS_00043889 other upstream 252139 16961269 ~ 16964105 (-) False XLOC_022237
TCONS_00043893 other upstream 268800 16977930 ~ 16978915 (-) False XLOC_022237
TCONS_00043898 other upstream 274647 16983777 ~ 16984594 (-) True XLOC_022237
TCONS_00043900 other upstream 335164 17044294 ~ 17046384 (-) True XLOC_022239

Expression Profile

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