RNA id: TCONS_00044391


Basic Information

Item Value
RNA id TCONS_00044391
length 541
RNA type processed_transcript
GC content 0.46
exon number 5
gene id XLOC_022510
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 33739215 ~ 33753361 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACTATGAACCCCAGAGGCTCTCTCAGGAGAGACAACTCTTCCAGTTTTCGGTCTGACAGACCAGCTTATGGCACCTACAGCCCCACTAGCCCTCCACAGGTGGATGGAACCAATGCCTCTGAAGACAAACCAGTGGTGGAAGGGAAGAAAGATGAGAAGAAAGAGTCAACGCAAGCTTCGAATCAAGACGGACAGGGAGAGTCTTCTGAGGAGGATAACAATGAAACTGAACTGAAGACCAACTCAAACTCCAAAAACAGAGAACAGAAGCCAGTGGAGAAGGATGATGGGAGTTCTGGTGTGGAGAACGGGATACATCCTGATGTTAAATCAGATGAACAAGAAACAGATGCTTCATGCCATGCTCTTAACAAGGATGAGCGTCCACCAGGAGAAGTGAAGGAGGGAGTAAAGACAGAGGCCTCGAAATAGCAGACAAAAGAAAAGATCTACTGTCTATTGCCAATATCTGGAACCAAACATGAAGTGAACAACATAACGGAGGATGTCTGAACACTGTTCTTACatgaaatcatgatt

Function

GO:

id name namespace
GO:0071800 podosome assembly biological_process
GO:0097320 plasma membrane tubulation biological_process
GO:0006911 phagocytosis, engulfment biological_process
GO:0005886 plasma membrane cellular_component
GO:0002102 podosome cellular_component
GO:0001891 phagocytic cup cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005543 phospholipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-126 Predicted to enable phospholipid binding activity. Predicted to be involved in phagocytosis, engulfment; plasma membrane tubulation; and podosome assembly. Predicted to be located in cytoplasm. Predicted to be active in plasma membrane and podosome. Predicted to colocalize with phagocytic cup. Orthologous to human BIN2 (bridging integrator 2).

Ensembl:

ensembl_id ENSDART00000147549

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044385 lncRNA downstream 366 33731189 ~ 33739111 (-) False XLOC_022509
TCONS_00045062 lncRNA downstream 532 33731189 ~ 33738945 (-) False XLOC_022509
TCONS_00044389 lncRNA downstream 913 33731189 ~ 33738564 (-) False XLOC_022509
TCONS_00044387 lncRNA downstream 985 33731189 ~ 33738492 (-) False XLOC_022509
TCONS_00044386 lncRNA downstream 3552 33731459 ~ 33735925 (-) False XLOC_022509
TCONS_00044394 lncRNA upstream 2642 33747413 ~ 33750320 (-) True XLOC_022510
TCONS_00044397 lncRNA upstream 16377 33761148 ~ 33764275 (-) False XLOC_022511
TCONS_00044744 lncRNA upstream 1022550 34767321 ~ 34768151 (-) True XLOC_022515
TCONS_00045063 lncRNA upstream 1455921 35200692 ~ 35203084 (-) True XLOC_022518
TCONS_00044416 lncRNA upstream 1648336 35393107 ~ 35396760 (-) True XLOC_022520
TCONS_00044388 mRNA downstream 907 33731568 ~ 33738570 (-) True XLOC_022509
TCONS_00044382 mRNA downstream 29448 33681677 ~ 33710029 (-) False XLOC_022508
TCONS_00044384 mRNA downstream 29513 33699317 ~ 33709964 (-) True XLOC_022508
TCONS_00044383 mRNA downstream 36577 33683485 ~ 33702900 (-) False XLOC_022508
TCONS_00044380 mRNA downstream 59212 33657005 ~ 33680265 (-) False XLOC_022507
TCONS_00044395 mRNA upstream 12402 33757173 ~ 33775309 (-) False XLOC_022511
TCONS_00044396 mRNA upstream 15635 33760406 ~ 33775244 (-) False XLOC_022511
TCONS_00044398 mRNA upstream 19187 33763958 ~ 33775145 (-) True XLOC_022511
TCONS_00044399 mRNA upstream 190106 33934877 ~ 33944597 (-) True XLOC_022512
TCONS_00044401 mRNA upstream 232953 33977724 ~ 33986762 (-) False XLOC_022514
TCONS_00044369 other downstream 438058 33301304 ~ 33301419 (-) True XLOC_022500
TCONS_00044368 other downstream 520349 33219005 ~ 33219128 (-) True XLOC_022498
TCONS_00044367 other downstream 863817 32875546 ~ 32875660 (-) True XLOC_022497
TCONS_00044359 other downstream 1405363 32325967 ~ 32334114 (-) True XLOC_022488
TCONS_00044348 other downstream 1599519 32139843 ~ 32139958 (-) True XLOC_022484
TCONS_00044400 other upstream 224095 33968866 ~ 33968988 (-) True XLOC_022513
TCONS_00044402 other upstream 233654 33978425 ~ 33986365 (-) True XLOC_022514
TCONS_00044409 other upstream 1499607 35244378 ~ 35256445 (-) False XLOC_022519
TCONS_00044432 other upstream 2119955 35864726 ~ 35864853 (-) True XLOC_022530
TCONS_00044435 other upstream 2253776 35998547 ~ 35999332 (-) True XLOC_022531

Expression Profile

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