XLOC_022508 (pou6f1)


Basic Information

Item Value
gene id XLOC_022508
gene name pou6f1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 33681677 ~ 33710029 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044382
GCCAGCGCCATTTTTTCAATGCGAGACTCGGCCTGCATAAATTATGTTCATGACGTAGTGCAAAAGAGCAAATTTGTGTTAATTTTTCGGCACTTTTCTACAGATAAGGGGTTACCTTGGCTATTAAGGTGCACTTGCTCCACCGGCACGACAGTTTGCGGAAAGACGCCATTAAACATTTAGTTGAAAAGAAGCCCAGACTGCTTCCCCGAGCCTCCTTATCAATGCAAATAGCTCTTTTGTGTGCATTCGCAGCGCGCGTCGGAAGCTGTGAGATGAATTTTTaattatgcatatttaaaaacaaactgtGGCAAAGCTCGCCGAAGGaggagaaaataaagaaaatagtcCACCTTTCAGCGGGTGACGCTTTGGAGCTGCTAACATCTCCTTCGACAACTATGCAGAAACATCAGTGATCTTCTCAGAGCTTAGACTTCATCATCATGGACACTGAGGATCTCCCTGCAAACAATGCACCTCTCACTGTCAACGAGCAGCTTTTAGGTTCCTGCACTTTGAAATTCCCAGCACAAGACGCGCAGGTCATTGTCATGTCAGGCCAGGAGACCATCCGTGTGCTGGAGGTGGAGGTGGACACGGCCTTATCTTCTGCAGGGGCTGCAGAGTCTGGGGGTGATGAAGAAGGCTCTGGTCAGAGCCTGGAAGCAACAGAAGAGGCTCAACTGGACGGTCCAGTAACCACAAGCTCTACCACAGCTGTGACTGTGGAGGTTTCAGCACCTGTAGTGCAGACTGTGGTCTCCAAAGCTGCCATCAGTGTGTCTCCAGCTCAGCAGACCAGCGTTCCCATTACTGTTCAGGCTTGCCCACAGGTCCTGACTCAGGATGGTCTGGCGTCTCTGATGACTGGCATGCTTGCCCAGCAGAGTTCTCTAGGTCAGCCGCTGCTCATTCCTCTCAGTATGGCTGGATCAGTCGGGGGTCAGGGTGGTCTGGCGGTGCTCACTTTACCCACCGCCACTGTGGCCACTCTCCCCGGTCTCGCTGCTGCCAGTCCTGCTGGAGGCCTGCTGAAGCTGCCGTTTGCTGGACTGCAAGCTGCTACTGTGTTGAACTCTGTGCAGACCCAGCTTCAGGCACCTGCGCAGGCCGTCTTGCAGCCTCAGATGTCTGCTTTACAGGCTATGCAGCAGACGCAAACCACAGCGGCCACCACTGCGTCTATTGTGCAGAAGGCATCAGAGCCCAGTGTCTCCGTCGCAACACTGCAGACCGCAGGACTCTCCATCAACCCTGCTATTATTAGTGCAGCGTCTTTAGGAGCTCAGCCGCAGTTCATCAGCTCTCTTACTACGACTCCCATCATCACCAGTGCCATGTCAAACGTGGCAGGTCTCACAAGTCAACTCATCACCAACGCACAGGGCCAGGTGATAGGAACTCTTCCTCTGCTGGTCAACCCCGCTTCTTTGGCTGGAGCTGCAGCGGCCTCTGCTTTACCTGCTCAAGGCCTGCAGGTTCAGACCGTTGCTCCACAGCTACTCCTGAACTCGCAGGGACAGATCATTGCTACGATAGGGAACGGTCCAACAGCTGCTATCCCATCCACCGCTTCTGTCCTCCCCAAAGCCACCGTTCCCCTGACCCTCACCAAAACCACCACACAGGGTCCTGTTGGGAAAGTGGCCCCATCCAAAGTGATCATTGCTCCCCAACCGTCAGTGGTTAAACCGGTGACCTCACTCACGGCTGCCGGTGTCATCGCCTGTGGAGAAATGCCTACCGTCGGGCAGCTTGTCAACAaGCCGTCTGCTGTGAAAGATGAAGAGGCCATTAATCTGGAGGAGATTCGAGAGTTCGCCAAGAACTTTAAGATTCGACGGCTCTCTCTGGGTTTGACACAGACTCAAGTGGGCCAAGCTCTGACTGCTACCGAGGGCCCTGCGTACAGTCAGTCAGCCATCTGCAGGTTTGAGAAGCTGGACATCACTCCTAAAAGTGCGCAGAAGCTGAAGCCTGTGCTGGAGCGCTGGCTGGCCGAGGCAGAGCTCTGGAACCAGAAAGGTCAGCAGAACTTGATGGAGTTCGTGGGAGGAGAACCGTCCAAGAAACGCAAACGGAGAACGAGCTTCACGCCACAGGCCATAGAAGTCCTCAACACTTACTTCGAGAAAAACTCCCTTCCGACGGGCCAGGAGATTACAGAGATCGCCAAGGAGCTGAACTACGACCGAGAGGTGGTTCGGGTCTGGTTCTGCAACCGTCGACAGACTCTGAAAAATACCAGCAAGATTAACGTGTTTCAATCCCAGTAGGAACAACGGTGGATTTTACGGACGTGGATGTATTGGTGCTAGCTGCAAAATGACTCAATTGCTGTTGTGATGAAGCCAGCGGTACTCGGATTGTGTGCAGTCTTCGTATAGTATCAGACATACtctttttgttgtttcttttgtttCCGTTATGCTGCATGCAGAGTGACGTTTTGCCGTGCCACAACAGTTTTCAATGATAAATGGCTTTCGAACTATTTAAAGTAAAGACGATGCTACAAAATCACGTAGTCGCTGTTTTACGGACAAAAATAAGCacttaattaaatatgtaaatgagaAGAACTTCCAAAATGttctcagtttttattttttggtaggAACTAACCGCTTAAAttgtgactacgtttacattTAGCTGGTTATTCAATAATTTGACCGGTTTAGGGTTTTTTAATTCATATAATTTTACTGTAAACTTTACGCTGGTGACTGTACTTTAATTGCCTGACACAAATTACTGATACTCGGATATCTCACACTGTTCAAAAATCCAGGgcatatttatgatttttttttccatttcagtTTCAGTAAACGCAGCGTTTTTGTGCTTAATGTAGATGTGGTTCGTTCAAGTGGACAATCATAGTACTCTAAATCAGAAAGCATGCCCTGCTTTTATATAGTTAAGACATTTCTAATTTCCATCTTGACTGtcatcatatttttgtgtgtCAGAAGTATATGGTTTCACTTTCAAATGCAATTTCAAAGATTACATTAATTGACTTAGAAAATTATGGATTTTACTGTTAGTGTTTTTGCCATAACCTataagtagggccagatggaatctgtggacattttttgctatttctgctgagaattttgtaaaaaatctgtggatttatgtggaattatgttgggagtatcgtaactaattacttaatacatgaaatgaaaaataatagtttttttaacatttatttaatgtttaaaatgcaaatccatctagatccacttgtttggtaaacaaagcaagactctcatataatatatctactaaaaaaacagaaatgattactttagaaactgttttgtaaaaaaacaaacacattcatattagtcaataagattactgaaattaattaaaaaaaactgaataaatataaatttacacacatttacacaagtaaataaagagACTTAATGATAGGCTGAAAATCTGCCAAATTCTGCGCaagcagattccatgtgggcctacctaTAAGCATATGGAGAGATGAAGTGATACTTGCATTCACACTTGTATGGGCACATCTTTTGGAAAGTTTGTGAGCCGTCAAACAAGTGTTATTTCTATCATAAATGCATTGAATAAATTTGGACTGCGCTGTCATTTGTACAATTTGTGGCAGGAATATTCATCGGTCATGTAATCATTTTCCTATTTGGTACAACTGTCCAGACAGAAGTGTGTTGTAACATGTGTTTCACATGTTTGTCTTAAGCATAAAGCTATATTGTTCTTATGGACCTTCAGTATTTATCTAATGAATTCTTATTGGTACAATACCatgcatttacattttaacattgtGAAGAAGGAATGGCATTAGATATAGTGTTTTAACAAATGCTATTATTAACGTAGACTAAATGTGTACAAAAAATGAAAAGTTCAGCATTTTAATGTGTGCAGAAGTTATCGATTTTAAAAAGACgcctaaatgcatttacaaattataaaCGATGGTACGGTACTCCATtaactatatttattttgtatcaatTGTACTATTTGGTATTAACTTGTCATTTGAATAAATTAACACTAAAGAGTC
>TCONS_00044383
GTGACGCTTTGGAGCTGCTAACATCTCCTTCGACAACTATGCAGAAACATCAGTGATCTTCTCAGAGCTTAGACTTCATCATCATGGACACTGAGGATCTCCCTGCAAACAATGCACCTCTCACTGTCAACGAGCAGGTCATTGTCATGTCAGGCCAGGAGACCATCCGTGTGCTGGAGGTGGAGGTGGACACGGCCTTATCTTCTGCAGGGGCTGCAGAGTCTGGGGGTGATGAAGAAGGCTCTGGTCAGAGCCTGGAAGCAACAGAAGAGGCTCAACTGGACGGTCCAGTAACCACAAGCTCTACCACAGCTGTGACTGTGGAGGTTTCAGCACCTGTAGTGCAGACTGTGGTCTCCAAAGCTGCCATCAGTGTGTCTCCAGCTCAGCAGACCAGCGTTCCCATTACTGTTCAGGCTTGCCCACAGGTCCTGACTCAGGATGGTCTGGCGTCTCTGATGACTGGCATGCTTGCCCAGCAGAGTTCTCTAGGTCAGCCGCTGCTCATTCCTCTCAGTATGGCTGGATCAGTCGGGGGTCAGGGTGGTCTGGCGGTGCTCACTTTACCCACCGCCACTGTGGCCACTCTCCCCGGTCTCGCTGCTGCCAGTCCTGCTGGAGGCCTGCTGAAGCTGCCGTTTGCTGGACTGCAAGCTGCTACTGTGTTGAACTCTGTGCAGACCCAGCTTCAGGCACCTGCGCAGGCCGTCTTGCAGCCTCAGATGTCTGCTTTACAGGCTATGCAGCAGACGCAAACCACAGCGGCCACCACTGCGTCTATTGTGCAGAAGGCATCAGAGCCCAGTGTCTCCGTCGCAACACTGCAGACCGCAGGACTCTCCATCAACCCTGCTATTATTAGTGCAGCGTCTTTAGGAGCTCAGCCGCAGTTCATCAGCTCTCTTACTACGACTCCCATCATCACCAGTGCCATGTCAAACGTGGCAGGTCTCACAAGTCAACTCATCACCAACGCACAGGGCCAGGTGATAGGAACTCTTCCTCTGCTGGTCAACCCCGCTTCTTTGGCTGGAGCTGCAGCGGCCTCTGCTTTACCTGCTCAAGGCCTGCAGGTTCAGACCGTTGCTCCACAGCTACTCCTGAACTCGCAGGGACAGATCATTGCTACGATAGGGAACGGTCCAACAGCTGCTATCCCATCCACCGCTTCTGTCCTCCCCAAAGCCACCGTTCCCCTGACCCTCACCAAAACCACCACACAGGGTCCTGTTGGGAAAGTGGCCCCATCCAAAGTGATCATTGCTCCCCAACCGTCAGTGGTTAAACCGGTGACCTCACTCACGGCTGCCGGTGTCATCGCCTGTGGAGAAATGCCTACCGTCGGGCAGCTTGTCAACAaGCCGTCTGCTGTGAAAGATGAAGAGGCCATTAATCTGGAGGAGATTCGAGAGTTCGCCAAGAACTTTAAGATTCGACGGCTCTCTCTGGGTTTGACACAGACTCAAGTGGGCCAAGCTCTGACTGCTACCGAGGGCCCTGCGTACAGTCAGTCAGCCATCTGCAGGTTTGAGAAGCTGGACATCACTCCTAAAAGTGCGCAGAAGCTGAAGCCTGTGCTGGAGCGCTGGCTGGCCGAGGCAGAGCTCTGGAACCAGAAAGGTCAGCAGAACTTGATGGAGTTCGTGGGAGGAGAACCGTCCAAGAAACGCAAACGGAGAACGAGCTTCACGCCACAGGCCATAGAAGTCCTCAACACTTACTTCGAGAAAAACTCCCTTCCGACGGGCCAGGAGATTACAGAGATCGCCAAGGAGCTGAACTACGACCGAGAGGTGGTTCGGGTCTGGTTCTGCAACCGTCGACAGACTCTGAAAAATACCAGCAAGATTAACGTGTTTCAATCCCAGTAG
>TCONS_00044384
GAGCAAATTTGTGTTAATTTTTCGGCACTTTTCTACAGATAAGGGGTTACCTTGGCTATTAAGGTGCACTTGCTCCACCGGCACGACAGTTTGCGGAAAGACGCCATTAAACATTTAGTTGAAAAGAAGCCCAGACTGCTTCCCCGAGCCTCCTTATCAATGCAAATAGCTCTTTTGTGTGCATTCGCAGCGCGCGTCGGAAGCTGTGAGATGAATTTTTaattatgcatatttaaaaacaaactgtGGCAAAGCTCGCCGAAGGaggagaaaataaagaaaatagtcCACCTTTCAGCGGGTGACGCTTTGGAGCTGCTAACATCTCCTTCGACAACTATGCAGAAACATCAGTGATCTTCTCAGAGCTTAGACTTCATCATCATGGACACTGAGGATCTCCCTGCAAACAATGCACCTCTCACTGTCAACGAGCAGGTCATTGTCATGTCAGGCCAGGAGACCATCCGTGTGCTGGAGGTGGAGGTGGACACGGCCTTATCTTCTGCAGGGGCTGCAGAGTCT

Function

symbol description
pou6f1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within atrioventricular canal morphogenesis. Predicted to be located in nucleus. Is expressed in atrioventricular canal; atrium; cardiac ventricle; and central nervous system. Orthologous to human POU6F1 (POU class 6 homeobox 1).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:1905222 atrioventricular canal morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-530 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within atrioventricular canal morphogenesis. Predicted to be located in nucleus. Is expressed in atrioventricular canal; atrium; cardiac ventricle; and central nervous system. Orthologous to human POU6F1 (POU class 6 homeobox 1).

Ensembl:

ensembl_id ENSDARG00000011570

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044382 False 4090 mRNA 0.44 12 33681677 33710029
TCONS_00044383 False 1871 mRNA 0.55 10 33683485 33702900
TCONS_00044384 True 525 mRNA 0.47 3 33699317 33709964

Neighbor

gene id symbol gene type direction distance location
XLOC_022507 csrnp2 coding downstream 1412 33633241 ~ 33680265 (-)
XLOC_022506 NA coding downstream 62831 33608009 ~ 33618846 (-)
XLOC_022505 itga5 coding downstream 123516 33447625 ~ 33558161 (-)
XLOC_022504 NA coding downstream 239335 33406774 ~ 33442342 (-)
XLOC_022503 NA coding downstream 297813 33378523 ~ 33383864 (-)
XLOC_022509 NA coding upstream 21160 33731189 ~ 33739111 (-)
XLOC_022510 bin2a coding upstream 29186 33739215 ~ 33753361 (-)
XLOC_022511 racgap1 coding upstream 47144 33757173 ~ 33775309 (-)
XLOC_022512 COQ10A coding upstream 224848 33934877 ~ 33944597 (-)
XLOC_022513 CT025912.1 coding upstream 258837 33968866 ~ 33968988 (-)
XLOC_022499 NA non-coding downstream 344823 33232978 ~ 33336854 (-)
XLOC_022515 NA non-coding upstream 1057292 34767321 ~ 34768151 (-)
XLOC_022518 NA non-coding upstream 1490663 35200692 ~ 35203084 (-)
XLOC_022523 NA non-coding upstream 1830331 35540360 ~ 35549662 (-)

Expression


Co-expression Network