XLOC_022499


Basic Information

Item Value
gene id XLOC_022499
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 33232978 ~ 33336854 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045045
CAGGTCCACATCCTTCCAGGATCAAGATGTTCTGTTCTGAGGGCTGTGGGATCCAGAGAGTGTGAGAGAATGACTCGGCCTCTCCCTTCAGCGAGCCCAAACCTGTCTCTCCCTCTGTGCCTGCAGGTCATGCAGGAGAGGTGCAGGAATTGTAGGGAGGGATGCATAATCTGCTGGTCTCAGGGGACGTTCTGCAGGTGTGCTCATCTGCTGGCTttaggagagaaagagagagagagccagagacagagagagacccAATTTCCCCCTCTCCTTGAGTGAAGGGCAGCCAAGACGTCTCCAGAAGAACGGGGTGGAAATATGGATTGGCTTGGATAATGTCGAGAGCAGCCCACATTATCACAATGGTATGGATGAACATGTACCGAATAGTTTTATATGTGCTTTTGGAAAAGGGCACGAGAAGTCAGTTGATCATAACATATGATGTCACAGTCTAGACTGATGCATAACTGTAATCATCTTCAGACAACTTCTGTTTACCGTGTCAAACATTTATTCCATATAACAAAATTcttctaagatttttttttagcagttagcttaaagggatagttcacccaaaaatttaaatttactcacAAGTGATTACAAACCTttacaagtttttaaaaaaattttttttatcattgtagCTAAAAGActtaatttgaagaaagctgaaaatatgTAACTACCATTTATTTagcctactatggaagttaatggttacaggtttccacctttcattaaaatacac
>TCONS_00045046
GTCTGATTGTGGCCCACTGGAGGGCACTGTGGTTCCGCCGAGTCAAACTGGAAATCTGAAAACTGCAATGAAGAGACTCGTTTCTATACTGAAGGAAACCGCCGCCGCACAACGTGGAGAACATACGGTGTGAAAAAGTTTGCTTTTAACTCACAGATGTAATCTCAACAGCATACGTGTGTACGAGATGCTTTACAGACGGAGTGTCTGTTAAACGCGTGCTCCCTTCGAGAGATGTCAAAGAGATGCAAATgagtcagAGCCCATCTGCGCCATGGCATTGTCTTCATTTTGCAGTGAAGATGTGTTCTCGGCTTCTTGCTGTGTCATGGCATTTCAACACCATCAGAAAATCATTACGCATCAGAGAGAAGCAGGAAGACGGACTTGTCAGATGATCAAGATGTTCTGTTCTGAGGGCTGTGGGATCCAGAGAGTGTGAGAGAATGACTCGGCCTCTCCCTTCAGCGAGCCCAAACCTGTCTCTCCCTCTGTGCCTGCAGGTCATGCAGGAGAGGTGCAGGAATTGTAGGGAGGGATGCATAATCTGCTGGTCTCAGGGGACGTTCTGCAGGTGTGCTCATCTGCTGGCTttaggagagaaagagagagagagccagagacagagagagacccAATTTCCCCCTCTCCTTGAGTGAAGGGCAGCCAAGACGTCTCCAGAAGAACGGGGTGGAAATATGGATTGGCTTGGATAATGTCGAGAGCAGCCCACATTATCACAATGGTATGGATGAACATGTACCGAATAGTTTTATATGTGCTTTTGGAAAAGGGCACGAGAAGTCAGTTGATCATAACATATGATGTCACAGTCTAGACTGATGCATAACTGTAATCATCTTCAGACAACTTCTGTTTACCGTGTCAAACATTTATTCCATATAACAAAATTcttctaagatttttttttagcagttagcttaaagggatagttcacccaaaaatttaaatttactcacAAGTGATTACAAACCTttacaagtttttaaaaaaattttttttatcattgtagCTAAAAGActtaatttgaagaaagctgaaaatatgTAACTACCATTTATTTagcctactatggaagttaatggttacaggtttccacctttcattaaaatacac
>TCONS_00045047
GAAGAGACTCGTTTCTATACTGAAGGAAACCGCCGCCGCACAACGTGGAGAACATACGGTGTGAAAAAGTTTGCTTTTAACTCACAGATGTAATCTCAACAGCATACGTGTGTACGAGATGCTTTACAGACGGAGTGTCTGTTAAACGCGTGCTCCCTTCGAGAGATGTCAAAGAGATGCAAATgagtcagAGCCCATCTGCGCCATGGCATTGTCTTCATTTTGCAGTGAAGATGTGTTCTCGGCTTCTTGCTGTGTCATGGCATTTCAACACCATCAGAAAATCATTACGCATCAGAGAGAAGCAGGAAGACGGACTTGTCAGATGATCAAGATGTTCTGTTCTGAGGGCTGTGGGATCCAGAGAGTGTGAGAGAATGACTCGGCCTCTCCCTTCAGCGAGCCCAAACCTGTCTCTCCCTCTGTGCCTGCAGGTCATGCAGAAAGCGAGAGATGCCAGAACGAAGAAGGGAGGGTGTGTTGTGAAGACCACTTAGTTGAAGAGTAGCAGCGTGGCTTTGTGTGAAAAAATATTGATGCTGTCTTTCACGACATGTCTAATAATGTAGTAAG
>TCONS_00045048
CTCGAatttttttacattgcttttatttcGTTTGTGGAATCTCCTTTGCCGGACTCAAACACTAGCTACCAGAAAAAGAGAAGTTGACCATGGAGATGTCAGCTGAGAGCCCATCTGCGCCATGGCATTGTCTTCATTTTGCAGTGAAGATGTGTTCTCGGCTTCTTGCTGTGTCATGGCATTTCAACACCATCAGAAAATCATTACGCATCAGAGAGAAGCAGGAAGACGGACTTGTCAGATGATCAAGATGTTCTGTTCTGAGGGCTGTGGGATCCAGAGAGTGTGAGAGAATGACTCGGCCTCTCCCTTCAGCGAGCCCAAACCTGTCTCTCCCTCTGTGCCTGCAGGTCATGCAGgAGGAGATGCATTAAAACGCATATACACGGTCTTTGACACCTGGAGCAACTGAACGGGATTTTGAAAGTTTGATAG
>TCONS_00045049
TGTGGTTCCGCCGAGTCAAACTGGAAATCTGAAAACTGCAATGAAGAGACTCGTTTCTATACTGAAGGAAACCGCCGCCGCACAACGTGGAGAACATACGGTGTGAAAAAGTTTGCTTTTAACTCACAGATGTAATCTCAACAGCATACGTGTGTACGAGATGCTTTACAGACGGAGTGTCTGTTAAACGCGTGCTCCCTTCGAGAGATGTCAAAGAGATGCAAATgagtcagAGCCCATCTGCGCCATGGCATTGTCTTCATTTTGCAGTGAAGATGTGTTCTCGGCTTCTTGCTGTGTCATGGCATTTCAACACCATCAGAAAATCATTACGCATCAGAGAGAAGCAGGAAGACGGACTTGTCAGATGATCAAGATGTTCTGTTCTGAGGGCTGTGGGATCCAGAGAGTGTGAGAGAATGACTCGGCCTCTCCCTTCAGCGAGCCCAAACCTGTCTCTCCCTCTGTGCCTGCAGGTCATGCAGgAGGAGATGCATTAAAACGCATATACACGGTCTTTGAC
>TCONS_00045050
CTCTGGAGGACGACTGGATTCTGTGTTGAGGAGCAGCAGGTGTAGGAATGCCTGGCCCAACAGTGAGCCCATCTGCGCCATGGCATTGTCTTCATTTTGCAGTGAAGATGTGTTCTCGGCTTCTTGCTGTGTCATGGCATTTCAACACCATCAGAAAATCATTACGCATCAGAGAGAAGCAGGAAGACGGACTTGTCAGATGATCAAGATGTTCTGTTCTGAGGGCTGTGGGATCCAGAGAGTGTGAGAGAATGACTCGGCCTCTCCCTTCAGCGAGCCCAAACCTGTCTCTCCCTCTGTGCCTGCAGGTCATGCAGgAGGAGATGCATTAAAACGCATATACACGGTCTTTGAC
>TCONS_00045051
GAAGAGACTCGTTTCTATACTGAAGGAAACCGCCGCCGCACAACGTGGAGAACATACGGTGTGAAAAAGTTTGCTTTTAACTCACAGATGTAATCTCAACAGCATACGTGTGTACGAGATGCTTTACAGACGGAGTGTCTGTTAAACGCGTGCTCCCTTCGAGAGATGTCAAAGAGATGCAAATgagtcagAGCCCATCTGCGCCATGGCATTGTCTTCATTTTGCAGTGAAGATGTGTTCTCGGCTTCTTGCTGTGTCATGGCATTTCAACACCATCAGAAAATCATTACGCATCAGAGAGAAGCAGGAAGACGGACTTGTCAGATTGTCCACAGATACCGGAGGACTGCGAGCTGTGTCTTAGTGATACATCAAGCACGTCATTCGCGCATGGATTTTGTAGACTCGATGTGCGCCACTCTGATCAAGATGTTCTGTTCTGAGGGCTGTGGGATCCAGAGAGTGTGAGAGAATGACTCGGCCTCTCCCTTCAGCGAGCCCAAACCTGTCTCTCCCTCTGTGCCTGCAGGTCATGCAGGAACTCTACACCAGAGGGGGAGGTTTGTAGATAAGATCTCGATTGCAGGTGTGTCACCCTCAACGCTGACTGTCTCTCTGAGTGTGTCTCCAAACATTTATGAGCAGAGTTACTCCTGAGCATGGCCAGGCAAATTCTGCTTATTTTTGCCAATTATGCTCAGAATTTTGTCAAACaaatatctgcagatttatgtgggaATAATTTGAGAGCATAGTAGCTAAAATGTAACATGACATTGTAAAATATATAGGTAACacttttgatggtccatttgattattagtagactgtctgcttaatatatgttgatactgctaaacagacaagtacatgtcaacttacactaaccagaACCCCA
>TCONS_00045052
GTCTGATTGTGGCCCACTGGAGGGCACTGTGGTTCCGCCGAGTCAAACTGGAAATCTGAAAACTGCAATGAAGAGACTCGTTTCTATACTGAAGGAAACCGCCGCCGCACAACGTGGAGAACATACGGTGTGAAAAAGTTTGCTTTTAACTCACAGATGTAATCTCAACAGCATACGTGTGTACGAGATGCTTTACAGACGGAGTGTCTGTTAAACGCGTGCTCCCTTCGAGAGATGTCAAAGAGATGCAAATgagtcagAGCCCATCTGCGCCATGGCATTGTCTTCATTTTGCAGTGAAGATGTGTTCTCGGCTTCTTGCTGTGTCATGGCATTTCAACACCATCAGAAAATCATTACGCATCAGAGAGAAGCAGGAAGACGGACTTGTCAGATGATCAAGATGTTCTGTTCTGAGGGCTGTGGGATCCAGAGAGTGTGAGAGAATGACTCGGCCTCTCCCTTCAGCGAGCCCAAACCTGTCTCTCCCTCTGTGCCTGCAGGTCATGCAGGAACTCTACACCAGAGGGGGAGGTTTGTAGATAAGATCTCGATTGCAGGTGTGTCACCCTCAACGCTGACTGTCTCTCTGAGTGTGTCTCCAAACATTTATGAGCAGAGTTACTCCTGAGCATGGCCAGGCAAATTCTGCTTATTTTTGCCAATTATGCTCAGAATTTTGTCAAACaaatatctgcagatttatgtgggaATAATTTGAGAGCATAGTAGCTAAAATGTAACATGACATTGTAAAATATATAGGTAACacttttgatggtccatttgattattagtagactgtctgcttaatatatgttgatactgctaaacagacaagtacatgtcaacttacactaaccagaACCCCA
>TCONS_00045053
GTCTGATTGTGGCCCACTGGAGGGCACTGTGGTTCCGCCGAGTCAAACTGGAAATCTGAAAACTGCAATGAAGAGACTCGTTTCTATACTGAAGGAAACCGCCGCCGCACAACGTGGAGAACATACGGTGTGAAAAAGTTTGCTTTTAACTCACAGATGTAATCTCAACAGCATACGTGTGTACGAGATGCTTTACAGACGGAGTGTCTGTTAAACGCGTGCTCCCTTCGAGAGATGTCAAAGAGATGCAAATgagtcagAGCCCATCTGCGCCATGGCATTGTCTTCATTTTGCAGTGAAGATGTGTTCTCGGCTTCTTGCTGTGTCATGGCATTTCAACACCATCAGAAAATCATTACGCATCAGAGAGAAGCAGGAAGACGGACTTGTCAGATCGTATCTGTGATGATGTCACAACGCTGAGGAGGGGACAGAGACGGGGTTGATGCTTTGCCTTGGATTTGGTACTGTTGCCATGGGATACATATATGCTAATAAGCAAGATGGGCACACTCATGAGCAG

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0016073 snRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0000460 maturation of 5.8S rRNA biological_process
GO:0010212 response to ionizing radiation biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:1905354 exoribonuclease complex cellular_component
GO:0000178 exosome (RNase complex) cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045045 False 760 lncRNA 0.41 3 33232978 33309292
TCONS_00045046 False 1137 lncRNA 0.43 4 33232978 33323292
TCONS_00045047 False 573 lncRNA 0.47 4 33241437 33323223
TCONS_00045048 False 435 lncRNA 0.47 5 33256741 33336854
TCONS_00045049 False 523 lncRNA 0.48 4 33257671 33323265
TCONS_00045050 False 355 lncRNA 0.51 4 33257671 33334279
TCONS_00045051 False 899 lncRNA 0.45 5 33285395 33323223
TCONS_00045052 False 872 lncRNA 0.45 4 33285395 33323292
TCONS_00045053 True 524 lncRNA 0.47 3 33309389 33323292

Neighbor

gene id symbol gene type direction distance location
XLOC_022498 AL929087.1 coding downstream 13850 33219005 ~ 33219128 (-)
XLOC_022496 plxna2 coding downstream 194555 32579495 ~ 33038423 (-)
XLOC_022497 BX470150.1 coding downstream 357318 32875546 ~ 32875660 (-)
XLOC_022492 NA coding downstream 662279 32408778 ~ 32570699 (-)
XLOC_022501 si:ch211-226m16.2 coding upstream 880 33337734 ~ 33350990 (-)
XLOC_022502 slc48a1a coding upstream 20309 33357163 ~ 33361425 (-)
XLOC_022503 NA coding upstream 41669 33378523 ~ 33383864 (-)
XLOC_022504 NA coding upstream 69920 33406774 ~ 33442342 (-)
XLOC_022505 itga5 coding upstream 110771 33447625 ~ 33558161 (-)
XLOC_022506 NA non-coding upstream 271155 33608009 ~ 33618846 (-)
XLOC_022509 NA non-coding upstream 394335 33731189 ~ 33739111 (-)
XLOC_022513 CT025912.1 non-coding upstream 632012 33968866 ~ 33968988 (-)

Expression


Co-expression Network