XLOC_022492


Basic Information

Item Value
gene id XLOC_022492
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32408778 ~ 32570699 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045040
TGTTATTCTTTTGCATATTGTCTATGTATATCTGAAGTTTCTGTTTGTCCTCTGTGACTGTGGATGGTGTTTTTCTGCTGTACCTGGAGCGCAGGCTGCTGGTCTGAGGAGAGTAACAGTCTGATGAAGTCGCTAATTTATACTTGTTGACACCTGGACATGGATCAGAGTAAAGAGAATTTGAAGCGCTCAGAGAACAAGTCTTCCTCCCATTGCATCTGATGAGATTCCAGTACCATGTGGCGAGGCTGGATTAAAGATAATGAGGtttagtttcttgcacagactggTCATTTCATTTAAAACCTCAGTGTAACATCAGGAGCCAGTATTTTTGTATATGTTTGTTAACTTTCATAATGTGAGTCATCAGGAATCGCCGTTTCAGCTAAAAAGTATTTCTACGGGATCAAAATAAGCCACCCACACTTTTTTGATAGACGCATCAGCTAAATTAATACAGGTAAATGTATTTAAAGCACAGAAAAATGAAATGTATAACACACATTTACTCTGTGTTGGGGATTGAGTAATTTGTCGTATTATCTCATGCATGTCAGTGATTATGTTacattacaaatgtaaatatgggaggtgaattcattcatttttgtctaTTTGTAAAATCCTTTGTAAGATTTGCTT
>TCONS_00045041
AAGGTGTCGTGGCCTATGAAATTCGGCTCTCCGGACTGGACAAAAGTGCCAATGCTGGAGAGAAGAGCACTGCGGACAGAGATACTTGTTGACACCTGGACATGGATCAGAGTAAAGAGAATTTGAAGCGCTCAGAGAACAAGTCTTCCTCCCATTGCATCTGATGAGATTCCAGTACCATGTGGCGAGGCTGGATTAAAGATAATGAGGtttagtttcttgcacagactggTCATTTCATTTAAAACCTCAGTGTAACATCAGGAGCCAGTATTTTTGTATATGTTTGTTAACTTTCATAATGTGAGTCATCAGGAATCGCCGTTTCAGCTAAAAAGTATTTCTACGGGATCAAAATAAGCCACCCACACTTTTTTGATAGACGCATCAGCTAAATTAATACAGGTAAATGTATTTAAAGCACAGAAAAATGAAATGTATAACACACATTTACTCTGTGTTGGGGATTGAGTAATTTGTCGTATTATCTCATGCATGTCAGTGATTATGTTacattacaaatgtaaatatgggaggtgaattcattcatttttgtctaTTTGTAAAATCCTTTGTAAGATTTGCTT
>TCONS_00044363
GTTTTagtgaacaataacaacaacCATTTAGAAAGtcataagggtgagtaaatgacagaattgggtgaactgtctctttaaatgcgcCCAATAAAGACGGCAGTCCGGCTAAAAAACCAGCAGCGACAACGCCACATATGCTGGTTACTTGGGGTTTTTCAGCAGACAGTTCAATTAACTTTATCATCCGCAGAGCTGCAGGAGAGACGACCAccacaacagcagcagcaacagctaAACAAGCGtccaggGGCATACGCTCATGATGCTATCCAAAGCAAGAAGGTGTCGTGGCCTATGAAATTCGGCTCTCCGGACTGGACAAAAGTGCCAATGCTGGAGAGAAGAGCACTGCGGACAGAGACTCTCCTGGGATCCTCCGACCTCTCCTCCCTTGGTGTGGCCTGAACTCTGACACATAACATTCTTGAACTTCTCTCAATCTATCCCTCAGCAAGGCTATCTAACCATCAGTGTGAGGCAAGGGAAAACTCCACGACCCTCACAGCTGTGACAACACACGCCTTCGTGGGGCCAACACCAGAAAACACCCTGCTGCAGTGGTTGGAAGTGtggatatatatgtgtgtgtttaatctCTGACTTCTTGTGTCACACAatcccccaacacacacacatacatacactgcaTTTTCTACTGGAAAAACAGATATAGGTCTCTAAGTGTTTTAAAGATCGGTGAGCAAAGGTAAATGgtcaacaaaaaagaaagaattacAATTTTAGACCCAATAATGAGCATTATTTCGCAGCTCTCTGGAAtaattgattctgattggtcatgcGTGACATTCCAAGGTttgttattctgtgataacaatgACCTAGATGTACTTTTCCCA
>TCONS_00044743
TGGGGTTTTTCAGCAGACAGTTCAATTAACTTTATCATCCGCAGAGCTGCAGGAGAGACGACCAccacaacagcagcagcaacagctaAACAAGCGtccaggGGCATACGCTCATGATGCTATCCAAAGCAAGAAGGTGTCGTGGCCTATGAAATTCGGCTCTCCGGACTGGACAAAAGTGCCAATGCTGGAGAGAAGAGCACTGCGGACAGAGGTACTGATAgggtaaacattttttaatgaaaaaaacatgaatgaaacaTCACTAATATCCTTAGTAGATATTAATTCCTTTCATa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117366

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045040 False 645 lncRNA 0.37 3 32408778 32417158
TCONS_00045041 False 587 lncRNA 0.38 3 32408778 32557718
TCONS_00044363 False 863 lncRNA 0.45 3 32537814 32570699
TCONS_00044743 True 299 lncRNA 0.44 2 32557553 32570550

Neighbor

gene id symbol gene type direction distance location
XLOC_022491 si:ch211-66i15.4 coding downstream 4749 32400806 ~ 32404029 (-)
XLOC_022490 ankrd52a coding downstream 18036 32362085 ~ 32390742 (-)
XLOC_022489 NA coding downstream 56074 32347999 ~ 32352704 (-)
XLOC_022488 rnf41 coding downstream 74570 32308814 ~ 32334208 (-)
XLOC_022487 dgkaa coding downstream 104024 32238337 ~ 32304754 (-)
XLOC_022496 plxna2 coding upstream 8796 32579495 ~ 33038423 (-)
XLOC_022497 BX470150.1 coding upstream 304847 32875546 ~ 32875660 (-)
XLOC_022498 AL929087.1 coding upstream 648306 33219005 ~ 33219128 (-)
XLOC_022499 NA coding upstream 662279 33232978 ~ 33336854 (-)
XLOC_022500 AL929087.2 coding upstream 730605 33301304 ~ 33301419 (-)
XLOC_022482 NA non-coding downstream 267458 32111318 ~ 32141320 (-)
XLOC_022484 CU469363.1 non-coding downstream 268820 32139843 ~ 32139958 (-)
XLOC_022480 NA non-coding downstream 400982 32006905 ~ 32007796 (-)
XLOC_022474 BX927365.2 non-coding downstream 653910 31754752 ~ 31754868 (-)
XLOC_022503 NA non-coding upstream 807824 33378523 ~ 33383864 (-)

Expression


Co-expression Network