XLOC_022482


Basic Information

Item Value
gene id XLOC_022482
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32111318 ~ 32141320 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045036
CGGTTTTCTCTGTTCAAGACGGAGGCTTTTTGATGCACCATCAAAAGAAGTTAAGGGAAAGCACACAATTAAACAAGAGTGGGTCTTTTCCAAAAGTTATTATATAAACGTCCACCGGTTTCCTGTACTGGTCTCTGGCAGCCTTGAGAACATGAGAATGCTGGGATATAAAACAAGACCGACACTGGGGGCTCAAGTTTCGATGGAGAGCTCGGTTTGGAAAAGAGCCCAAAGGTTGTTCTGAGTTGTTCCACAGTGCAAGAACAAGGAGGCACCGAATGAACACATGCAGGACCCTAATGACCGCATAACagcATTGCTGATGGGTTCGAGCGACCCATTTCCAGGCAGCTCCACACATTCAGCAGAGTGTCATTGATGCAGGACTCGGGCTAATGATGAACTGACATGCTCGTGTCAAAGCACAAAAAGCTGTGTTCGAGAGATTACAGTATGACGCTGGGTAATTTCAGCATCTGTTGGAGGGGAGAAAACCAGATGCAAATGAAGGCTCTTTATTGTCAGTCACGTTGCAGCTTGTCTTGTGTGTAATCTAGGATTTGTCTCTGCATTCGGATCTGGTTTAGTTACAGCTTAAGATTAAAGAATTGAGGAGCAGGGCAATATCGTATCCCATATTAATGAGCTAGGAGAGAAAAACTCTGTGGTGAAAT
>TCONS_00045037
TCAAGACGGAGGCTTTTTGATGCACCATCAAAAGAAGTTAAGGGAAAGCACACAATTAAACAAGAGTGGGTCTTTTCCAAAAGTTATTATATAAACGTCCACCGGTTTCCTGTACTGGTCTCTGGCAGCCTTGAGAACATGAGAATGCTGGGATATAAAACAAGACCGACACTGGGGGCTCAAGTTTCGATGGAGAGCTCGGTTTGGAAAAGAGCCCAAAGGTTGTTCTGAGTTGTTCCACAGTGCAAGAACAAGGAGGCACCGAATGAACACATGCAGGACCCTAATGACCGCATAACagCACAGACACCAAATAACAAATAAGAGGCACCATGATGTCCAAACAGTGGACCCGGTTGTTCTCTCTCATCCTTAATTCAATTGTCCTCTGTGGCTCTCAGTGCCTCTGTTTCTCATGCACAAATGCAAATGCTCTCCATGTCGTCCCACGAGCCCGGGACTTTAGCCTCACATTCGGGAGCAACAGCGGCAATACCTTTCCATCACAGTCAGGACAGAGCGACCCATCACTCCAGTGGCGTGTGAGGAACAGGAAGTGACAGACTGCTTTTCCCTCCATCCCTTCCTTTTTGTTCAGTCCAATGAGTCTAAACGTGATTGACAGCAAAAGGCATTTTAAGCGCAGCCACAGTACAAGCAGAGCACAAGCATTTTTAACAGCACATCAAATATTGCATAACGAGACTGCGATGAGAATTGACATGTCAAGTCACTGGCTGCGTTTTATTACACGTTTTAGTTTCTGATAAAAGCTTGCCAAAGTTGGGTGTCAATAGCAAAGTCATCTGGGGTAGGCAAGTTTTTATCTTTAGATTAATTTTAGGCTGGTGTCATGGTGGTCgtctcacagcgagaaggtcgttggtttgagtctcggctgggtcagttggcattttgcatgttctccccatgttcgcgtgggtttcctccgggtactctggtttcccgcacagtccaaagacatgcg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045036 False 674 lncRNA 0.45 2 32111318 32141320
TCONS_00045037 True 988 lncRNA 0.47 2 32119690 32141307

Neighbor

gene id symbol gene type direction distance location
XLOC_022481 letmd1 coding downstream 11212 32079046 ~ 32100106 (-)
XLOC_022480 NA coding downstream 103522 32006905 ~ 32007796 (-)
XLOC_022479 BX927210.1 coding downstream 137258 31972384 ~ 31974060 (-)
XLOC_022478 ormdl2 coding downstream 141532 31962383 ~ 31969786 (-)
XLOC_022477 si:dkey-126g1.7 coding downstream 179242 31920840 ~ 31932076 (-)
XLOC_022485 nr4a1 coding upstream 7949 32149269 ~ 32194397 (-)
XLOC_022486 grasp coding upstream 58268 32199588 ~ 32236122 (-)
XLOC_022487 dgkaa coding upstream 97017 32238337 ~ 32304754 (-)
XLOC_022488 rnf41 coding upstream 167494 32308814 ~ 32334208 (-)
XLOC_022489 NA coding upstream 206679 32347999 ~ 32352704 (-)
XLOC_022474 BX927365.2 non-coding downstream 356450 31754752 ~ 31754868 (-)
XLOC_022472 BX927365.1 non-coding downstream 393608 31693368 ~ 31717710 (-)
XLOC_022466 NA non-coding downstream 687796 31420811 ~ 31423522 (-)
XLOC_022461 NA non-coding downstream 844697 31253300 ~ 31266621 (-)
XLOC_022492 NA non-coding upstream 267458 32408778 ~ 32570699 (-)
XLOC_022493 NA non-coding upstream 317535 32458855 ~ 32461920 (-)
XLOC_022494 NA non-coding upstream 348846 32490166 ~ 32496144 (-)
XLOC_022495 NA non-coding upstream 354991 32496311 ~ 32536550 (-)

Expression


Co-expression Network