XLOC_022481 (letmd1)


Basic Information

Item Value
gene id XLOC_022481
gene name letmd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32079046 ~ 32100106 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044343
AGGTGCGAAGCGGAGTCCATCCTGTAGTGTCTGATGTCCATGCTGTGAGAACATTGTTCTCTGGACCACCCTTGGGTATCAAGAAAATGTATGCAAATCAGATGAGACATCTCTGTCCTTTGCTCTTCTTGACTCCTCGTCTCCCGGCCTTCTGGATCAGCGGACGTTTGAACAGTCACGCCTTGGAACTCATGCAGCTCGATCGTGCCATTATTCGATTGGGCTTGCACCAGTTAAACGACTCGGAGCTcagagagGCTTGTTTTGTGAGGGGGCTGAATCCAGAGCGTCTGAGTCCCGGACAGTTACGAGAGTGGCTCACACAGTGGTTGCAGTTCTCAGCACACCTCAGAGGCACCACAGCAGCCGAAGAAAGAGATGAAGAAGATGATGACGCCCACCACTATCAGCACCATAGGAGAACCAGAGGCTCCTTGGAGGATCGCCGTGTTGTGCAAAGAAACGTGAACCAGTATCCCCAGAACTATGAGGGCCAGGCCACACAGCTAGAAATgagaaagagaaaaaatagtTGAAGTCAATAGATTTCTCAATACAATAGTGTTTTAGTTATTCATCATTCC
>TCONS_00044344
CACTTCACCAGCCAATCAAAGACCCGCATCCGCACTTCATGGTCGTGACGACACGCCCACGCCGAACTGTCAGCTGCTCAGTTCAAGATGGCGCTGTCCTGTCGGGGAATATGCCGCGGGGCTTCAGTGATCTTACTGTATGGAAAACAACCTGTCAGGGTCAAAGCAAGTCTCTGCACTCCTAGATTGGCTTCCTCAAAACCCAGCAGTCTGTGGTTTGTCAGACACTACTCGCCTTCACAAGCAAGACACGGGATTGGTCGAAGCGTTGTGTCGAGTCTAAAGTGGGCCAATGAGAAGTACGAGAGATTCCTGCAGCGGCGCTTCCCTCGCTTTTTTGTCCTCTATCAGACTTTCATGAGAGGCTTCAGACTCCTGTTTGAAGATGGCAAAGAAGTGCAGAAAATCGTGTTCCGCATGATTAGTGACAAAACAAGCCACGCCAATTTGCCTTACCGGGATATGGAGAAAATCAGACAGGTCCGCAGGGATTTGATCAAAGCCATTCCCTTGGTCATCCTGTCAATACCTCCATTTGCCAACTATCTGGTCTTTATGCTTATGTACCTTTATCCTCGGCAGCTTCTCATCCGGCACTTCTGGACCCCTCAGCAGCTGGTGGATTTTCAGGTAGCCTATCATAACCAGAGGGCACGTCATCACTGGGCTGTGGTCAAAGGGCTGGAAAGCACATCAAATTCTGTCCAAGACACCCGACTGAAAAGACACCTGCTGGAGCTCTGCAGTAAGGTGCGAAGCGGAGTCCATCCTGTAGTGTCTGATGTCCATGCTGTGAGAACATTGTTCTCTGGACCACCCTTGGGTATCAAGAAAATGTATGCAAATCAGATGAGACATCTCTGTCCTTTGCTCTTCTTGACTCCTCGTCTCCCGGCCTTCTGGATCAGCGGACGTTTGAACAGTCACGCCTTGGAACTCATGCAGCTCGATCGTGCCATTATTCGATTGGGCTTGCACCAGTTAAACGACTCGGAGCTcagagagGCTTGTTTTGTGAGGGGGCTGAATCCAGAGCGTCTGAGTCCCGGACAGTTACGAGAGTGGCTCACACAGTGGTTGCAGTTCTCAGCACACCTCAGAGAGTCAGAGACTTCGCTCTATCTGCACTGCATGGTTCTGCTCACGGTAAACTACCCTAAACAGCAACGGCACTGACCTCCAGAGGAAGCACACCACTTCTCTTTCCAACACCCGGCGCTGAAACATACACATCCAAAGGCAAAGCACCACGGGAACAAACACAAACTTATATGCAAATCTGacatacattttttgttgtgtttcttTCATAATCAGAGGCATTTTGTACGTTTCTGTGATATTTTTCATGAaactgtcatgctttaaaaatgttcttGTGGCAATGAATCTAATTTTGTTTA
>TCONS_00044345
GCTGTCCTGTCGGGGAATATGCCGCGGGGCTTCAGTGATCTTACTGTATGGAAAACAACCTGTCAGGGTCAAAGCAAGTCTCTGCACTCCTAGATTGGCTTCCTCAAAACCCAGCAGTCTGTGGTTTGTCAGACACTACTCGCCTTCACAAGCAAGACACGGGATTGGTCGAAGCGTTGTGTCGAGTCTAAAGTGGGCCAATGAGAAGTACGAGAGATTCCTGCAGCGGCGCTTCCCTCGCTTTTTTGTCCTCTATCAGACTTTCATGAGAGGTTTTCTGCTTTTTTGTAAAGGCTTCAGACTCCTGTTTGAAGATGGCAAAGAAGTGCAGAAAATCGTGTTCCGCATGATTAGTGACAAAACAAGCCACGCCAATTTGCCTTACCGGGATATGGAGAAAATCAGACAGGTCCGCAGGGATTTGATCAAAGCCATTCCCTTGGTCATCCTGTCAATACCTCCATTTGCCAACTATCTGGTCTTTATGCTTATGTACCTTTATCCTCGGCAGCTTCTCATCCGGCACTTCTGGACCCCT

Function

symbol description
letmd1 Predicted to enable ribosome binding activity. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Orthologous to human LETMD1 (LETM1 domain containing 1).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0043022 ribosome binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080723-8 Predicted to enable ribosome binding activity. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Orthologous to human LETMD1 (LETM1 domain containing 1).

Ensembl:

ensembl_id ENSDARG00000030641

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044343 False 584 mRNA 0.49 4 32079046 32092443
TCONS_00044344 False 1403 mRNA 0.49 9 32087902 32100106
TCONS_00044345 True 538 lncRNA 0.48 5 32093948 32100014

Neighbor

gene id symbol gene type direction distance location
XLOC_022480 NA coding downstream 71250 32006905 ~ 32007796 (-)
XLOC_022479 BX927210.1 coding downstream 104986 31972384 ~ 31974060 (-)
XLOC_022478 ormdl2 coding downstream 109260 31962383 ~ 31969786 (-)
XLOC_022477 si:dkey-126g1.7 coding downstream 146970 31920840 ~ 31932076 (-)
XLOC_022476 mtfr2 coding downstream 165757 31901350 ~ 31913289 (-)
XLOC_022482 NA coding upstream 11212 32111318 ~ 32141320 (-)
XLOC_022483 rprm3 coding upstream 28293 32128399 ~ 32129614 (-)
XLOC_022484 CU469363.1 coding upstream 39737 32139843 ~ 32139958 (-)
XLOC_022485 nr4a1 coding upstream 49163 32149269 ~ 32194397 (-)
XLOC_022486 grasp coding upstream 99482 32199588 ~ 32236122 (-)
XLOC_022474 BX927365.2 non-coding downstream 324178 31754752 ~ 31754868 (-)
XLOC_022472 BX927365.1 non-coding downstream 361336 31693368 ~ 31717710 (-)
XLOC_022466 NA non-coding downstream 655524 31420811 ~ 31423522 (-)
XLOC_022461 NA non-coding downstream 812425 31253300 ~ 31266621 (-)
XLOC_022489 NA non-coding upstream 247893 32347999 ~ 32352704 (-)
XLOC_022492 NA non-coding upstream 308672 32408778 ~ 32570699 (-)
XLOC_022493 NA non-coding upstream 358749 32458855 ~ 32461920 (-)

Expression


Co-expression Network