XLOC_022483 (rprm3)


Basic Information

Item Value
gene id XLOC_022483
gene name rprm3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32128399 ~ 32129614 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044346
TCCAGACATCACTTAGACCGCAACAGATTTACGTGGATGAGGCACTCGATCATATCACACAAATAAACGAGCCTTCCTTCCACATACCAAAGGCGTAAcgtgtttattaattttttaaatatgaaattcaCAGAAACGCGCAAGTGACCTTGGGAATCGCAGGACTTTTCGGAAGTTTTGAACATCAATACGCGTTAGACACGCCACGGAAAAACTCGACATGAATGTTTCTCACGGACTACTGAACCGGACGATCTCCACAGTGAAGCATCCTCTGGACGCCGGTCGAGGATGCTGCAACTTCTCGGTGATCACCAGCGACGGGTTCGGTTCACCGATCCAGGACGAGCGCGAACAGTTCATCACGCGTCTGGTGCAGATAGCGGTGCTCTGCGTGCTCTCGCTGACTGTCATTTTCGGCATCTTCTTCCTCGGATGCAATCTACTGATAAAGTCAGAGAGCATGATAAACTTGCTGGTGGAGGACAGGAGACCTTCTAAAGACGCGGAAATTATTATGATCGCTGCATGAGTGGAGCAGACTGCGTGATCATCACCAGTGACTTTCCTTACACAAACTCATCTCTTCATGCATGAAAGTCACCAGCTGGTTTGAGTTTCACACCAGTGCTGAATGGATTTTTATAAAAGGTAGCCTATATTTCATCTTGGATCTAAAAAACATTCATGTTgcagatgtaaaatgtaaaaagtttgtCTTTCATGTTTGTCTTCATGGAGGAACACCGAGGGCAGAGAAAGATCCAGATCCATTACTCCAGGAAGGATCAGTTGGAATTGAGAACAATGTCACTTGTTTTATACACATTGGATGAATTGATTAATGTTTGGCATGTATCGAAATGAATGgattttcaatgggttaaagaaATATGATTGTATTAACTtgcatgcaaaatatatattaaaaactgatTCAAATGTTATGATTAAGCATTTCTGGACTTTTTCAATGTTTGACAGCAAGAGCAGAAAACACTCCAAATTTATAAACACAGcatgtatatagtatatatttgcAATTAAGAGAAATTTGATTTGTGCATTTGCTTCATTGATTAATAAGAgatatttttatgtgtttaataTGATTGTAAACATGCAtgcaaaatggattaaaaacaaatgcaaagatTCTGCAGTCGAAATG
>TCONS_00044347
CTCAGCACGCGCACGGAGGCGCAATGAAATACCAGAGTGCGCTCTTCCAGACATCACTTAGACCGCAACAGATTTACGTGGATGAGGCACTCGATCATATCACACAAATAAACGAGCCTTCCTTCCACATACCAAAGGCGTAAcgtgtttattaattttttaaatatgaaattcaCAGAAACGCGCAAGTGACCTTGGGAATCGCAGGACTTTTCGGAAGTTTTGAACATCAATACGCGTTAGACACGCCACGGAAAAACTCGACATGAATGTTTCTCACGGACTACTGAACCGGACGATCTCCACAGTGAAGCATCCTCTGGACGCCGGTCGAGGATGCTGCAACTTCTCGGTGATCACCAGCGACGGGTTCGGTTCACCGATCCAGGACGAGCGCGAACAGTTCATCACGCGTCTGGTGCAGATAGCGGTGCTCTGCGTGCTCTCGCTGACTGTCATTTTCGGCATCTTCTTCCTCGGATGCAATCTACTGATAAAGTCAGAGAGCATGATAAACTTGCTGGTGGAGGACAGGAGACCTTCTAAAGACGCGGAAATTATTATGATCGCTGCATGAGTGGAGCAGACTGCGTGATCATCACCAGTGACTTTCCTTACACAAACTCATCTCTTCATGCATGAAAGTCACCAGCTGGTTTGAGTTTCACACCAGTGCTGAATGGATTTTTATAAAAGGTAGCCTATATTTCATCTTGGATCTAAAAAACATTCATGTTgcagatgtaaaatgtaaaaagtttgtCTTTCATGTTTGTCTTCATGGAGGAACACCGAGGGCAGAGAAAGATCCAGATCCATTACTCCAGGAAGGATCAGTTGGAATTGAGAACAATGTCACTTGTTTTATACACATTGGATGAATTGATTAATGTTTGG

Function

symbol description
rprm3 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; midbrain; and retinal ganglion cell layer.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-123 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; midbrain; and retinal ganglion cell layer.

Ensembl:

ensembl_id ENSDARG00000092792

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044346 False 1171 mRNA 0.40 1 32128399 32129569
TCONS_00044347 True 897 mRNA 0.45 1 32128718 32129614

Neighbor

gene id symbol gene type direction distance location
XLOC_022481 letmd1 coding downstream 28293 32079046 ~ 32100106 (-)
XLOC_022480 NA coding downstream 120603 32006905 ~ 32007796 (-)
XLOC_022479 BX927210.1 coding downstream 154339 31972384 ~ 31974060 (-)
XLOC_022478 ormdl2 coding downstream 158613 31962383 ~ 31969786 (-)
XLOC_022477 si:dkey-126g1.7 coding downstream 196323 31920840 ~ 31932076 (-)
XLOC_022484 CU469363.1 coding upstream 10229 32139843 ~ 32139958 (-)
XLOC_022485 nr4a1 coding upstream 19655 32149269 ~ 32194397 (-)
XLOC_022486 grasp coding upstream 69974 32199588 ~ 32236122 (-)
XLOC_022487 dgkaa coding upstream 108723 32238337 ~ 32304754 (-)
XLOC_022488 rnf41 coding upstream 179200 32308814 ~ 32334208 (-)
XLOC_022474 BX927365.2 non-coding downstream 373531 31754752 ~ 31754868 (-)
XLOC_022472 BX927365.1 non-coding downstream 410689 31693368 ~ 31717710 (-)
XLOC_022466 NA non-coding downstream 704877 31420811 ~ 31423522 (-)
XLOC_022461 NA non-coding downstream 861778 31253300 ~ 31266621 (-)
XLOC_022489 NA non-coding upstream 218385 32347999 ~ 32352704 (-)
XLOC_022492 NA non-coding upstream 279164 32408778 ~ 32570699 (-)
XLOC_022493 NA non-coding upstream 329241 32458855 ~ 32461920 (-)
XLOC_022494 NA non-coding upstream 360552 32490166 ~ 32496144 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_13360787_13361098 NA coding CI01000001 null 13360777 ~ 13361934 (-)