XLOC_022495


Basic Information

Item Value
gene id XLOC_022495
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32496311 ~ 32536550 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045044
CGAAAAGATGCCAATGACGTCTTTCTTTGTGAACCACTACAGACTATATACTGTGTTCATAACTGATCAGCTTGTGAAAGCAAATGCCGTCATGCACTCTGGATTTGTGTGTTCCTGGACCAATGAGTAATACATTGAGTCATCTTTAACCCTTAACCACCCAAAATataccaacacaaacacacacaaaataaggAAAATGAATAACAAAAGGCAAGCCGACATGCACGTGCATCTAAACCTCACGCAAGTCCATTTCCCCTGGTCAAACTTTCATTTCTCCTCGGTGCGACTGGGCGGGAATCGTTCGCATGTATCTGTGTGTTGGCGCCGCATGGAGAACATCTGGAAACAGTGCAGTGTGAGCAGCTTTGTGTGTTCTTGGGGACTGCTCGCAAAATTACTTGTCAAACATTTTGGCCAGATGGGGGAGAGAGCGGAGAACATGTGTCCCTCCCTCCCACCGCCTGGTTTCTTAGTTTCCCTCCTTTTTTTGAGGTGAGGGAAGTTGGGTGAAACTCTCACTGTAGCCCCCTTTTGACCTCTTCATTTCAGGCATGAAACCAAGACTCTCACACACGCTAGCAACATGGATTTCCTTTTTCTCTTTTCTGTCAATTTTTTGACTGATAGGCCCAGGCGCGCAACATCCACCTGGGCTGTTCAGTTTCTGGCTAGCATTGGTGGGTGGAGTGGGAGCGCTAACACTAGAGTGTGAGGAGACTCGGACGGGACAGCCAAGACTCCACATGTGGAACCGCATGTAACCTGAGCTGTTCTTTTGCCCAGCATTGAACAAGACGCTCCAGTTACAAACAGCCAACAGCGGCCCTTGAAAGTAGCATCCGTTGCACTGTACAAAAAGAACAAATCTGTAAATTAATTCCTGTGGCTGTGGTTTTGTAATGCAAGATGATTCAGGCACTTAGCGTGACCATAACTCACAGGAAAACTCATCTGTTTTCTGCTTCATAgtcgatgttttttttttattcttatgcaGACGGATGAAAAATGAACACGCTTGTGCTTTTGAGGGACGTTTAAGAAGCCATTTAGTGTGTGCATTTATCAAAAGTAACAAAGTACTTATTACATTCACTGTGGATCCAAAGAAAAATATTAACTGAAATGTACATTATCATGTTATGAGAGAAACTTTTGcttaaagggtttgttcaccccaaaatgaaaatcctgtcatcatttactcaccctcatgtcatccCAAATTAGatgggtttttttttaaactagagaaTGCAGATGAAGATGTTTTTAGCTAATCTGAATGATTCCTGTCAAGCATGCATAtagtttttttacttaaatttcaaacatttttcttggAACGGCTCTTCAAAACGGGTTTAACAAAACATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045044 True 1383 lncRNA 0.42 2 32496311 32536550

Neighbor

gene id symbol gene type direction distance location
XLOC_022494 NA coding downstream 167 32490166 ~ 32496144 (-)
XLOC_022493 NA coding downstream 34391 32458855 ~ 32461920 (-)
XLOC_022491 si:ch211-66i15.4 coding downstream 92282 32400806 ~ 32404029 (-)
XLOC_022490 ankrd52a coding downstream 105569 32362085 ~ 32390742 (-)
XLOC_022489 NA coding downstream 143607 32347999 ~ 32352704 (-)
XLOC_022496 plxna2 coding upstream 42945 32579495 ~ 33038423 (-)
XLOC_022497 BX470150.1 coding upstream 338996 32875546 ~ 32875660 (-)
XLOC_022498 AL929087.1 coding upstream 682455 33219005 ~ 33219128 (-)
XLOC_022499 NA coding upstream 696428 33232978 ~ 33336854 (-)
XLOC_022500 AL929087.2 coding upstream 764754 33301304 ~ 33301419 (-)
XLOC_022482 NA non-coding downstream 354991 32111318 ~ 32141320 (-)
XLOC_022484 CU469363.1 non-coding downstream 356353 32139843 ~ 32139958 (-)
XLOC_022503 NA non-coding upstream 841973 33378523 ~ 33383864 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G158020 NA non-coding CI01000030 null 731076 ~ 731792 (-)
striped catfish (Pangasianodon hypophthalmus) G151484 NA non-coding NC_047603.1 CM018549.1 19220016 ~ 19220343 (-)
tiger barb (Puntius tetrazona) G121438 LOC107708961,LOC107664629,LOC107654010,LOC107719547 unknown NC_056715.1 CM032084.1 15688891 ~ 15689794 (-)