XLOC_022491 (si:ch211-66i15.4)


Basic Information

Item Value
gene id XLOC_022491
gene name si:ch211-66i15.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32400806 ~ 32404029 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044361
GGTTGCCATGTTTACCAGTAAACATCCGGAAGCTATGGCGACACGGGGCTCAGTTTCAAGAGTCGCTTTCGGCAGCTGCCAGAACCGTCTCATGTTTCCGACGCACTTTGCGCCTGACCGAATGGGAAATGAAATGCTCTCACAGTTTGGTTCAGCTGAAGGAGGACCCGGATGTTACGACAACCACACGGTTGGCACACTTCTGTATGAACTCCAACACAAACCTGAGAGTAAGAGGGGATATGTGTTTGCAGCCCGCACTGCATCACGATTCCTGCCGGCTTTAAAGgcagTCACCCCTTCACCACAGAAATACCAGCTGGACTGGACTCTACCTAAAGTGTGTCCTCCTGGAAAAGCTCCCTTCAATAGTACCACTTTAAGATTCAGACCTAAAGATGCAGAAATCAGCCCTGGtccaGGGGCATACGCTCATGATGCTATCCAAAGCAAGAAGGTGTCATGGCCTATGAAATTCGGCTCTCCAGACTGGACAAAAGTGCCGATGCTGGAGAGAAGAGCACTGCGGACAGAGGTACAGATAGGGTcgacttttgttttttaatgataaatGCAACCACTAAGGTTAGTGGGTATGAATTCCTTTCATATTGATCTTTATAAATTTTGTGTTCATGCAGCTTTTCCATGACAAAGAGTTTAGGAAACAGAGGAACAGGGTGGCATATCTACACTTGTTTTACTGATGATACTAAAATACTACTAGAAGAATTAAGTGTGTACAAACATTAAAGCTTTAAAAGACAAGTTTTACCCACTTGATTTGTGTTTCCATTTTAGAATATGACCATGAACTATTTTGAAagcatattttaacatattaGATGTTTCAGGTACATAACGTGtaatcaattaatatttttagtaatTATCAAAGTAACAGGACACATATATCTATAttctgatttttaattttttaacatgtCCTTTTGAAACAATggctaaaaataaacaatgaaagaCATTTATTACCCCATTCACAAATGAATAACAAACACAAATCCAAAGAAACGTCACATTTCAGATGGGTTGAAAACTTCAAGGTATTTCAAGGGAAttcttatcaaaaaaaaaaaaaaaaa
>TCONS_00044362
ATGTTTACCAGTAAACATCCGGAAGCTATGGCGACACGGGGCTCAGTTTCAAGAGTCGCTTTCGGCAGCTGCCAGAACCGTCTCATGTTTCCGACGCACTTTGCGCCTGACCGAATGGGAAATGAAATGCTCTCACAGTTTGGTTCAGCTGAAGGAGGACCCGGATGTTACGACAACCACACGGTTGGCACACTTCTGTATGAACTCCAACACAAACCTGAGAGTAAGAGGGGATATGTGTTTGCAGCCCGCACTGCATCACGATTCCTGCCGGCTTTAAAGgcagTCACCCCTTCACCACAGAAATACCAGCTGGACTGGACTCTACCTAAAGTGTGTCCTCCTGGAAAAGCTCCCTTCAATAGTACCACTTTAAGATTCAGACCTAAAGATGCAGAAATCAGCCCTGGtccaGGGGCATACGCTCATGATGCTATCCAAAGCAAGAAGGTGTCATGGCCTATGAAATTCGGCTCTCCAGACTGGACAAAAGTGCCGATGCTGGAGAGAAGAGCACTGCGGACAGAGCTTTTCCATGACAAAGAGTTTAGGAAACAGAGGAACAGGGTGGCATATCTACACTTGTTTTACTGATGATACTAAAATACTACTAGAAGAATTAAGTGTGTACAAACATTAAAGCTTTAAAAGACAAGTTTTACCCACTTGATTTGTGTTTCCATTTTAGAATATGACCATGAACTATTTTGAAagcatattttaacatattaGATGTTTCAGGTACATAACGTGtaatcaattaatatttttagtaatTATCAAAGTAACAGGACACATATATCTATAttctgatttttaattttttaacatg

Function

symbol description
si:ch211-66i15.4 Predicted to enable cytoskeletal protein binding activity. Predicted to be involved in regulation of cell projection organization. Predicted to be active in ciliary basal body.

GO:

id name namespace
GO:0031344 regulation of cell projection organization biological_process
GO:0036064 ciliary basal body cellular_component
GO:0008092 cytoskeletal protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-121 Predicted to enable cytoskeletal protein binding activity. Predicted to be involved in regulation of cell projection organization. Predicted to be active in ciliary basal body.

Ensembl:

ensembl_id ENSDARG00000097071

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044361 False 1103 mRNA 0.39 5 32400806 32404029
TCONS_00044362 True 832 mRNA 0.42 6 32400964 32404022

Neighbor

gene id symbol gene type direction distance location
XLOC_022490 ankrd52a coding downstream 10064 32362085 ~ 32390742 (-)
XLOC_022489 NA coding downstream 48102 32347999 ~ 32352704 (-)
XLOC_022488 rnf41 coding downstream 66598 32308814 ~ 32334208 (-)
XLOC_022487 dgkaa coding downstream 96052 32238337 ~ 32304754 (-)
XLOC_022486 grasp coding downstream 164684 32199588 ~ 32236122 (-)
XLOC_022492 NA coding upstream 4749 32408778 ~ 32570699 (-)
XLOC_022493 NA coding upstream 54826 32458855 ~ 32461920 (-)
XLOC_022494 NA coding upstream 86137 32490166 ~ 32496144 (-)
XLOC_022495 NA coding upstream 92282 32496311 ~ 32536550 (-)
XLOC_022496 plxna2 coding upstream 175466 32579495 ~ 33038423 (-)
XLOC_022482 NA non-coding downstream 259486 32111318 ~ 32141320 (-)
XLOC_022484 CU469363.1 non-coding downstream 260848 32139843 ~ 32139958 (-)
XLOC_022480 NA non-coding downstream 393010 32006905 ~ 32007796 (-)
XLOC_022474 BX927365.2 non-coding downstream 645938 31754752 ~ 31754868 (-)
XLOC_022497 BX470150.1 non-coding upstream 471517 32875546 ~ 32875660 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_13519334_13521035 PIFO coding CI01000001 null 13519275 ~ 13521083 (-)