RNA id: TCONS_00045051


Basic Information

Item Value
RNA id TCONS_00045051
length 899
lncRNA type antisense_over
GC content 0.45
exon number 5
gene id XLOC_022499
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 33232978 ~ 33336854 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGAGACTCGTTTCTATACTGAAGGAAACCGCCGCCGCACAACGTGGAGAACATACGGTGTGAAAAAGTTTGCTTTTAACTCACAGATGTAATCTCAACAGCATACGTGTGTACGAGATGCTTTACAGACGGAGTGTCTGTTAAACGCGTGCTCCCTTCGAGAGATGTCAAAGAGATGCAAATgagtcagAGCCCATCTGCGCCATGGCATTGTCTTCATTTTGCAGTGAAGATGTGTTCTCGGCTTCTTGCTGTGTCATGGCATTTCAACACCATCAGAAAATCATTACGCATCAGAGAGAAGCAGGAAGACGGACTTGTCAGATTGTCCACAGATACCGGAGGACTGCGAGCTGTGTCTTAGTGATACATCAAGCACGTCATTCGCGCATGGATTTTGTAGACTCGATGTGCGCCACTCTGATCAAGATGTTCTGTTCTGAGGGCTGTGGGATCCAGAGAGTGTGAGAGAATGACTCGGCCTCTCCCTTCAGCGAGCCCAAACCTGTCTCTCCCTCTGTGCCTGCAGGTCATGCAGGAACTCTACACCAGAGGGGGAGGTTTGTAGATAAGATCTCGATTGCAGGTGTGTCACCCTCAACGCTGACTGTCTCTCTGAGTGTGTCTCCAAACATTTATGAGCAGAGTTACTCCTGAGCATGGCCAGGCAAATTCTGCTTATTTTTGCCAATTATGCTCAGAATTTTGTCAAACaaatatctgcagatttatgtgggaATAATTTGAGAGCATAGTAGCTAAAATGTAACATGACATTGTAAAATATATAGGTAACacttttgatggtccatttgattattagtagactgtctgcttaatatatgttgatactgctaaacagacaagtacatgtcaacttacactaaccagaACCCCA

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0016073 snRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0000460 maturation of 5.8S rRNA biological_process
GO:0010212 response to ionizing radiation biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:1905354 exoribonuclease complex cellular_component
GO:0000178 exosome (RNase complex) cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044363 lncRNA downstream 714696 32537814 ~ 32570699 (-) False XLOC_022492
TCONS_00044743 lncRNA downstream 714845 32557553 ~ 32570550 (-) True XLOC_022492
TCONS_00045041 lncRNA downstream 727677 32408778 ~ 32557718 (-) False XLOC_022492
TCONS_00044371 lncRNA upstream 18921 33342144 ~ 33342826 (-) False XLOC_022501
TCONS_00045054 lncRNA upstream 18921 33342144 ~ 33350982 (-) False XLOC_022501
TCONS_00044372 lncRNA upstream 19286 33342509 ~ 33350982 (-) True XLOC_022501
TCONS_00045056 lncRNA upstream 55300 33378523 ~ 33383864 (-) False XLOC_022503
TCONS_00045055 lncRNA upstream 55300 33378523 ~ 33383864 (-) True XLOC_022503
TCONS_00044366 mRNA downstream 246972 32579495 ~ 33038423 (-) True XLOC_022496
TCONS_00044365 mRNA downstream 340599 32579495 ~ 32944796 (-) False XLOC_022496
TCONS_00044364 mRNA downstream 392954 32579495 ~ 32892441 (-) False XLOC_022496
TCONS_00044361 mRNA downstream 881366 32400806 ~ 32404029 (-) False XLOC_022491
TCONS_00044370 mRNA upstream 14511 33337734 ~ 33350990 (-) False XLOC_022501
TCONS_00044373 mRNA upstream 33940 33357163 ~ 33361425 (-) True XLOC_022502
TCONS_00044374 mRNA upstream 124402 33447625 ~ 33558161 (-) False XLOC_022505
TCONS_00044376 mRNA upstream 310018 33633241 ~ 33654889 (-) False XLOC_022507
TCONS_00044378 mRNA upstream 310265 33633488 ~ 33640959 (-) False XLOC_022507
TCONS_00044368 other downstream 66267 33219005 ~ 33219128 (-) True XLOC_022498
TCONS_00044367 other downstream 409735 32875546 ~ 32875660 (-) True XLOC_022497
TCONS_00044359 other downstream 951281 32325967 ~ 32334114 (-) True XLOC_022488
TCONS_00044348 other downstream 1145437 32139843 ~ 32139958 (-) True XLOC_022484
TCONS_00044337 other downstream 1372153 31906998 ~ 31913242 (-) False XLOC_022476
TCONS_00044391 other upstream 416254 33739477 ~ 33744771 (-) False XLOC_022510
TCONS_00044400 other upstream 645643 33968866 ~ 33968988 (-) True XLOC_022513
TCONS_00044402 other upstream 655202 33978425 ~ 33986365 (-) True XLOC_022514
TCONS_00044409 other upstream 1921155 35244378 ~ 35256445 (-) False XLOC_022519
TCONS_00044432 other upstream 2541503 35864726 ~ 35864853 (-) True XLOC_022530

Expression Profile

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