RNA id: TCONS_00044365


Basic Information

Item Value
RNA id TCONS_00044365
length 6391
RNA type mRNA
GC content 0.51
exon number 32
gene id XLOC_022496
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32579495 ~ 33038423 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GtgcattttgaaaaatgattATCGTTCAGTGCATGAAACAGTTAAAGCATGCGACATGCAAATGGAGCCGGCCGTAAGTGAGTGCTAGCACAGGGGGCTGGGTTTAAACGCGCTGCTACTGTAACGCTGCTGGGCTCCGGTGCCTGTGCCAGTCTCGCGTAAAACCTTCACAGACGAGCAATGAGCGCGTGCATGACGGTCTGACGGAGAGCTGCTGATGAAAAGGCGTGATGTCAAGCCGCTGTCAGTTTCACAGGACTGTGGGAATGTGCCGTGCGCTTGGCAATGCGCGCTCGTGAATGACCATCTTCCGGCGTTGACGGTAAATTTTTGCTGCATAGATCAGTTACCTGAAGCCGCGGCGGCGTCCGTTCATTCATCGTCTCGCACGCGAGAATTCTTCGAGGAATTGTGAGAAATTTATTGAAGGGTGCTGCTCTAGCTTTGAAGACTCGGCATTCGCATTCGGATGTGGATCTATCTGTCAAAACTGAGCTGAACGCAGAGGCATCTTTTAAGTGCAACATTAGAGACCATCCCCAGCTTTCTTCGGGATTGTAGAAACATGTGAAGACTCTGGTGTGGCACTGGATTACAGAATTAGCATTCAGACTGCGAGAACAAAGGCCTTCTTGAACTTTTCTAAAGTCTTCATTTCCTAACCTGTCAGGTCCCTCAAACCATGGGGGGACAGCAGGATTCACAGAGGACTTTGAAGCAAAGCCCTGGGCAGGGTTTTACATTGTCCTTTACATGCTGGTTATTAGTTTTAATCTTGCCTGTAGTTTGCTGTGAACAGTCATTTACAACGTTTTACCCTGAGCGACGAGAATGGGCCTTCAACCACCTGACAGTTCACAAGACAACAGGGGCACTCTACATTGGTGCCGTCAACCGTGTCTACAAGTTATCAGGCAACCTAACACTATTAGTATCCCATGATACTGGTCCAGAAGATGACAACAAGGCTTGTTACCCTCCACTTATCGTTCAGCCTTGCTCTGAACCACTGATTTCTACCAACAACATCAACAAACTATTACTCATTGATTACTCCCAGAATCGACTGCTTGCCTGTGGAAGCCTCTACCAAGGTGTCTGCAAATTGCTACGGTTGGACGACCTCTTTATCCTGGTGGAACCCTCACACAAAAAGGAGCATTACCTCTCCAGTGTCAACCAGACAGGCACAATGTATGGAGTCATTGTGCCCTCACAGGGTAAAGATGGGACCCTCTTCATTGGTACTGCCGTGGACGGGAAGCAAGACTACTTTCCAACAATCTCCAGCCGAAAGCTTCCACGTGACCCAGAGTCTTCAGCGATGCTGGACTATGAGCTTCACACTGACTTTGTTTCATCCCTTATCAAAATTCCTTCTGACACTCTGGCATTGGTCTCTCATTTTGACATCTACTACATTTATGGCTTTGCTAGTGGCAATTTTGTCTACTTTCTGACCGTTCAGCCTGAAACACCTGAGAACAGCATGTCTTCCAGTGGACCCTCAAATGACTTGTTTTACACCTCTCGAATCGTCCGACTCTGCAAAGATGACCACAAGTTCCACTCCTATGTGTCTTTGCCTATTGGTTGTGTTCGAAACAGAGTTGAATATCGCCTTCTGCAGGCAGCATATCTGGGCAAGCCTGGGAGAGTGTTTGCGGCATCCCTTAACATCAGTGCTCAGGATGATGTGCTCTTTGCTGTCTTTTCCAAAGGACAGAAACAGTACCACCATCCACCTGATGACTCTGCCCTCTGCGTCTTTAGTATTCGGGACATTAATGCACGGATCAAGGAGCGTATGCAGTCCTGCTATCAGGGAGAGGGGAACTTGGAGCTCAACTGGCTGTTGGGAAAGGATGTACCTTGTACAAAAGCGCCTGTCCCTATTGATGACTCCTTCTGCGGTTTGGACATCAACCAGCCCCTTGGCGGCTCTCAACTGGTGACCGGGCACACACTTTATACAGAAAGCCGGGATCGCATGACTTCGGTGACCTCCTATGTCTATAATGGCTTCTGCGTGGCTTTTGTTGGCACCAAGAGTGGACGACTGAAAAagATTCGGGTTGATGGTCCTCCTCAAGGCGGCGTCCAGTATGAAACTCTTTCTGTCATCAAAGATGGAAACTCGATTCTCAGAGACATGGCCTTTTCCCTGGACAACAGCTACATCTACGTCATGTCGGAGAGACAGGTGACCCGGGTGCCGATCGAGTCCTGTGAGCAGTATAGCACATGCGGAGAGTGTCTGAGTTCAGGAGATCCACACTGCGGCTGGTGTGTCCTGCATAACATATGTTCTCAAAGAGATCGTTGTGAGCGGGCAAACGAGCCGTACCGCTTTGCCGCCACGCTGAACCAGTGTGTGAAAGCTACAGTGTACCCAGACAGCATCGCCGTGTCTGAACCCAGCGTACCGCTGCTTGTGAAAGTGACAGATGTTCCGGATCTTTCCGCTGGAATCACTTGCTCCTTTGGGAACCTGACAGAGGTTGAGGGCCGAGTGAATGGCAATCAGATTCTCTGCATTTCTCCGGCTGCTAAAGATGTTCCCATCATCCCCGCTGATCAAGactggTCAGGTGTGGAGCTCAGGCTGAACTCCAAGGAAACGGGTCAGATGCTCATTAGCACTGAGGTGAAGTTCTACAACTGCAGTGTACACCAGCTGTGTCTTTCCTGTGTGACCAGTTCCTTCCGCTGCCACTGGTGCAAGTACAGGAACCTCTGCACACATGACCCCTCCAGCTGCTCCTTCCAGGAGGGACGAGTCAATGCCTCAGAGGACTGCCCTCAACTGGTGCGCTCTGAGGAGATCCTGATCCCAGCAGGAGAGGTGAAGCCCATCACCCTGAAAGCTCGGAACCTTCCACAACCTCAGTCGGGGCAGCGCGGATACGAGTGTGTGTTACACATTCAAGGAGTCAGTCACAGAGTCACGGCGCTCAGATTCAACAGCTCCAGCGTGCAGTGCCAAAACAGCTCGTATCTGTATGAAGGCATGAGAATTAGTGAGCTGCCTGTGGATTTCTCAGTTGTCTGGAATGGAAACTTCATCATTGACAATCCTGAGAACATCAAAGTGCACCTGTACAAATGTGGCGCTCAGCGGGACAGCTGCGGTGTGTGTTTGAAGGCCGAGAGGAAGTTTCAGTGTGGATGGTGCAGTATGGAGGGCCGATGTACCCTGCGCCAGCACTGTCCCATGACCAACCCCTACACCAGCCGCTGGCTACACCTCGCCAGCACCAATGTCAAGTGCACCAACCCTCGAATCACCGAGGTAACCCCAGTGGCCGGACCACCAGAAGGGGGCACCAGAGTGACCATCCGTGGTGTGAACCTGGGCCTGTCCTTCTCTGACATGGTGAACAACGTGCAGGTGGCAGGAGTCCAGTGTACGCCACAGGAGAACGGCTACATCATCGCTGAACAgattgtATGTGAAATGGATGCAGCTCCAGTGGACAGTAAAGCCGGACCGGTCCATTTGTGTGTAGGGGAGTGTAAACCGGAGCTCCAGACTCGCTCTTCTCAGCTCTATTCCTTTGTGATGCCATCGGTCACAGGTTTGTCTCCCAGTCGTGGTCCGGAATCTGGAGGAACAAAAGTAACCATAATGGGGGAAAACCTGGGAGCAGGCAGCAGTGTCACTGTGCTTTTTGGGAACCAGACCTGCGAGTTTTACGAACGAACTATGACAGAGATTGTGTGTTACTCTGCACCATCTCTGACGGGCGTGGGTTCGGTTCAGATCAGCGTGAGTGTGGATCGCGCCCAAGTTCGAGACATCCTGGCTTTTGAGTATATAGACGACCCCACTGTTCAGCGAATCGAGCCGGAATGGAGCATCGCAAGcGGACACACACCTCTGGTGGTGACCGGGACGAACTTGGATGTGATACAGGAGCCGAGGATTCGGATCAAGTACGGCGGGCGGGAATCCGTAAACGTGTGTAAAGTTCTCAACACCACCACTATGAGCTGTTTCGCTCCCTCTCTGACGGCAGAGTACAGGCCTGGATTGGACTCAGTTAAACATGCGGACGAGTTTGGCTTTATTTTCAACAATGTCCAGGCTCTTCTAGTGTACAACAACACAAACTTCATGTACTACCCGAATCCTTTCTTTGAACCACTCAGCACCAATGGTGTTCTGGAGCAGAAACCTGGCTCACCTATCATTTTAAAGGGTAAGAATCTGGTTCCTTCAGCCGCTGGAGGAGTGAAGCTCAATTACACTGTTCTGATTGGAGAGACTCCCTGTTCTGTCACTGTATCTGAGTCTCAACTGCTGTGCGAACCTCCAAATCTTACCGGACAGTACAAAATCATGGTGCAGGTCGGTGGTCTGCACGTGTCTCCCGGCTCAGTAAACATTCTCTCCGACAGCCTTCTGACTCTTCCTGCCATCGTGAGCATCGCGGCCGGTGGAGGCCTTCTCCTCATCATCGTCATCCTTGTGCTCATTGCCTACAAGCGTAAATCCCGTGAGAACGACCTCACGCTCAAGCGCCTTCAGATGCAGATGGACAACCTGGAGTCCAGGGTCGCGCTGGAGTGCAAGGAAGCTTTTGCAGAACTGCAGACAGACATCAACGAGTTGACGAGTGATCTGGACCGGGCTGGTATTCCCTATCTGGATTATCGCACATATGCCATGAGAGTGTTATTCCCCGGCATTGAGGACCATCCTGTGCTCAGAGAGCTGGAGGTCTCTGGTAACGGGCAGTTGTGTGTGGAAAAAGCTCTGAAGCTGTTCGCCCAGCTGATAAACAACAAGGTGTTTTTGCTGACGTTCATCCGTACACTGGAAATGCAGCGTTCGTTCTCCATGCGTGATCGCGGTAACGTGGCGTCGCTCATCATGACGGCTCTACAGGGTCGACTGGAATACGCCACGGACGTCCTCAAACACCTGCTGTCCGACCTCATCGACAAGAACCTAGAGAGCAAAAACCATCCCAAACTACTGCTCAGGAGAACGGAGTCTGTCGCTGAGAAGATGCTAACCAACTGGTTTGCTTTCTTACTTCACAAGTTCCTGAAGGAGTGTGCAGGTGAGCCACTCTTCATGCTGTACTGTGCCATAAAACAGCAGATGGAAAAAGGCCCAATAGACGCCATCACTGGAGAGGCCCGATACTCCCTCAGCGAAGACAAACTCATCCGACAGCAGATCGACTACAAGACGCTGATCTTAAACTGCGTCAACCCAGAGAACGAGAACAGCCCGGAGATCCCGGTCAAGGTTTTGAACTGTGACACCATCACGCAAGTCAAGGAAAAGATTCTGGATGCTGTGTATAAAAACATGCCGTATTCACAGAGACCCAAAGCTGTAGACATGGACCTGGagtgGCGTCAGGGACGGATGGCCCGCGTGGTCCTGCAGGATGAAGACATCACCACCAAGATTGAAAATGATTGGAAGAGGCTCAACACTCTCATGCACTATCAGGTGTCCGACCGCTGTGTAGTGGCTTTGGTGCCCAAGCAGACGTCCTCCTACAACATTCCACCCACAACTAGCATCTCCCGGACATCTATCAGCAGATACGACTCAACATTCCGGTACACGGGCAGTCCGGACAGCCTGCGCTCTCGTGCTCCAATGATTACTCCAGATCTGGAGAGCGGAGTCAAAGTCTGGCATCTGGTGAAGAACCATGAGCATGGGGACCAAAAGGAGGGCGACCGCGGCAGCAAGATGGTATCTGAGATCTACCTCACCCGCCTGCTAGCTACTAAGGGTACGCTACAGAAATTCGTGGATGACCTGTTCGAGACTCTTTTCAGTACAGTTCACAGAGGCAGTGCGCTTCCTTTAGCAATCAAATATATGTTTGACTTCCTGGACGAGCAAGCGGACAAGCATGGCATCCATGACACTGATGTCCGCCACACCTGGAAAAGCAACTGCCTTCCTCTGCGCTTCTGGGTGAATGTGATCAAGAACCCCCAGTTTGTTTTTGACATTCATAAGAGCAGCATCACGGACGCCTGTCTGTCTGTGGTGGCTCAAACCTTCATGGACTCCTGCTCCACATCTGAACACAGACTGGGCAAGGATTCACCCTCTAATAAGCTGCTTTATGCTAAAGATATCCCCAACTACAAGAACTGGGTAGAAAGGTACTACGCTGACATCAGCAGGCTGCCAGCCATCTCTGATCAAGACATGAATGCGTATTTGGCGGAACAGGCCAGACTTCACTCCAGCGAGTTTAACATGCTCAGTGCCCTCAACGAGATTTACTCCTACATTAGCAAGTACAGCGAAGAGATCACAGCTGCACTGGATCAAGACGAGACGGCCAAGAAACAGCGATTGGCCTATAAAGTGGAGCAGCTCATCGCCGCCATGTCGCTGGAGAGCTGA

Function

GO:

id name namespace
GO:1902287 semaphorin-plexin signaling pathway involved in axon guidance biological_process
GO:0003403 optic vesicle formation biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0050772 positive regulation of axonogenesis biological_process
GO:0001654 eye development biological_process
GO:0030334 regulation of cell migration biological_process
GO:0008360 regulation of cell shape biological_process
GO:0007162 negative regulation of cell adhesion biological_process
GO:0007165 signal transduction biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0002116 semaphorin receptor complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0017154 semaphorin receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090311-6 Predicted to enable semaphorin receptor activity. Acts upstream of or within optic vesicle formation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of semaphorin receptor complex. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; hatching gland; olfactory field; optic vesicle; and retina. Orthologous to human PLXNA2 (plexin A2).

Ensembl:

ensembl_id ENSDART00000190388

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044363 lncRNA downstream 8796 32537814 ~ 32570699 (-) False XLOC_022492
TCONS_00044743 lncRNA downstream 8945 32557553 ~ 32570550 (-) True XLOC_022492
TCONS_00045041 lncRNA downstream 21777 32408778 ~ 32557718 (-) False XLOC_022492
TCONS_00045045 lncRNA upstream 288182 33232978 ~ 33309292 (-) False XLOC_022499
TCONS_00045046 lncRNA upstream 288182 33232978 ~ 33323292 (-) False XLOC_022499
TCONS_00045047 lncRNA upstream 296641 33241437 ~ 33323223 (-) False XLOC_022499
TCONS_00045048 lncRNA upstream 311945 33256741 ~ 33336854 (-) False XLOC_022499
TCONS_00045049 lncRNA upstream 312875 33257671 ~ 33323265 (-) False XLOC_022499
TCONS_00044361 mRNA downstream 175466 32400806 ~ 32404029 (-) False XLOC_022491
TCONS_00044362 mRNA downstream 175473 32400964 ~ 32404022 (-) True XLOC_022491
TCONS_00044360 mRNA downstream 188753 32362085 ~ 32390742 (-) True XLOC_022490
TCONS_00044358 mRNA downstream 245287 32308814 ~ 32334208 (-) False XLOC_022488
TCONS_00044356 mRNA downstream 274803 32239338 ~ 32304692 (-) False XLOC_022487
TCONS_00044370 mRNA upstream 392938 33337734 ~ 33350990 (-) False XLOC_022501
TCONS_00044373 mRNA upstream 412367 33357163 ~ 33361425 (-) True XLOC_022502
TCONS_00044374 mRNA upstream 502829 33447625 ~ 33558161 (-) False XLOC_022505
TCONS_00044376 mRNA upstream 688445 33633241 ~ 33654889 (-) False XLOC_022507
TCONS_00044378 mRNA upstream 688692 33633488 ~ 33640959 (-) False XLOC_022507
TCONS_00044359 other downstream 245381 32325967 ~ 32334114 (-) True XLOC_022488
TCONS_00044348 other downstream 439537 32139843 ~ 32139958 (-) True XLOC_022484
TCONS_00044337 other downstream 666253 31906998 ~ 31913242 (-) False XLOC_022476
TCONS_00044334 other downstream 775135 31803082 ~ 31804360 (-) True XLOC_022475
TCONS_00044329 other downstream 824627 31754752 ~ 31754868 (-) True XLOC_022474
TCONS_00044368 other upstream 274209 33219005 ~ 33219128 (-) True XLOC_022498
TCONS_00044369 other upstream 356508 33301304 ~ 33301419 (-) True XLOC_022500
TCONS_00044391 other upstream 794681 33739477 ~ 33744771 (-) False XLOC_022510
TCONS_00044400 other upstream 1024070 33968866 ~ 33968988 (-) True XLOC_022513
TCONS_00044402 other upstream 1033629 33978425 ~ 33986365 (-) True XLOC_022514

Expression Profile

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