XLOC_022502 (slc48a1a)


Basic Information

Item Value
gene id XLOC_022502
gene name slc48a1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 33357163 ~ 33361425 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044373
GTTTACGAAATAGCGGGTCTGCATTACATAATCCCTCATCGATGGTGTAATCCTTCTCCTTTTTCACAGCGGTCTTTACTTCGGTACTTTATACATTATCAATGGGTCCAAACAGGATCTACATCAGTGTTGGATATTCCACGTTCGGGATGCTGGTGGGGTTTTCGGCGTTTATCGTGTGGAATGTGGTTTATAAACAGCCCTGGACGGCGGCGATGGGCGGATTATCAGGAGTCCTGGCGCTCTGGGCTTTGGTCACCCACATCATGTACATTCAGGACTACTGGCGCACATGGCTGAAGGGACTCAAGTTCTTCATGTTTGTCAGCTCGGTCTTCTCCCTCTTAGCTGTCGCTGCTTTCGCCACTTTCATAACTTTATCGGTTATAGAAAAGCAGTCATTATCTGACCCTAAGAGCTTCTACCTGTCAGCCGTGTGGAGTTTCATGACTCTGAAATGGGCTTTTCTGCTGGGCCTGTACTCCTACCGCTACCGCCAGGAGTTTGCTGACATCAGCATCCTCAGTGACTTTTGATTGGCTCCTTCAGCTCTAATGGATTTGTAGTTGCCAGTCGGTGGCTTCACCTGCCAACATGAAgaagatggaaggatggatggatggttttccttttttaaataccGTCTTAACGGCCTCTTTCTTTCACAGAAAAGACTCAAATCTCATCCCCTCCTTCCCTCAGATTCAGGCCCTGTAGTAGGAAGTCAGTGAACATCAGCCTCTTTTCTTGTCAATTTGAGTTGATAAGGGGTTTTCTACTGATGCTGGATGAAGGTATGTTAGTGTTTGATTGTAAGTGGATACACTAATATATGGTCACAGGATGTTGTTACTTTACTCAGGGCAACTTCTTTCCAAAATGTCAGATGTGAAATGAAGGCTCTCCTTCACTgtcaacaaaagaaaaatgtgcaaaaactgtattttttggaAACAGCGTCTCGTTGGACCAGTTCTCTGTAAATGTCGCTTTTGATGGGTGGATATTAGTCCCTCAGAGCAGTGGAGCGACTTTGGTTGACGGCTGGACCATACAATCAATTCAGACACAGCATTGGTATTTGTAGgaaataatatacagtttaagtcagaattattagccccccccctccccccccccaattttttttcattttttaaaaaatatcccaaatgatgtttaacagagcaagaacattattacggtatgtctgataatattttatgttctggagaaagtcttatgtgttttatgtcagctagaataaaagcagtttttaattttttaaaagccattttaaggtcaaaattattagcccctttaagctatatattttttcgatagtctacagaacaaaccatcgttatacagtaacttgcctaattatcctaacctacctagttaagcctttaaatgtcactttaagctgtatagaagtgtctggaaaaatatccagtaaaatattctgtactgtcatcatggcaaagataaaataaa

Function

symbol description
slc48a1a Enables heme transmembrane transporter activity. Predicted to be involved in heme transport. Predicted to be located in endosome membrane and lysosome. Predicted to be integral component of membrane. Predicted to be active in lysosomal membrane and plasma membrane. Is expressed in several structures, including blood; central nervous system; heart; liver; and pleuroperitoneal region. Orthologous to human SLC48A1 (solute carrier family 48 member 1).

GO:

id name namespace
GO:0015886 heme transport biological_process
GO:0005764 lysosome cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0005768 endosome cellular_component
GO:0005886 plasma membrane cellular_component
GO:0010008 endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015232 heme transmembrane transporter activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-121 Enables heme transmembrane transporter activity. Predicted to be involved in heme transport. Predicted to be located in endosome membrane and lysosome. Predicted to be integral component of membrane. Predicted to be active in lysosomal membrane and plasma membrane. Is expressed in several structures, including blood; central nervous system; heart; liver; and pleuroperitoneal region. Orthologous to human SLC48A1 (solute carrier family 48 member 1).

Ensembl:

ensembl_id ENSDARG00000026907

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044373 True 1497 mRNA 0.41 3 33357163 33361425

Neighbor

gene id symbol gene type direction distance location
XLOC_022501 si:ch211-226m16.2 coding downstream 6173 33337734 ~ 33350990 (-)
XLOC_022499 NA coding downstream 20309 33232978 ~ 33336854 (-)
XLOC_022500 AL929087.2 coding downstream 55744 33301304 ~ 33301419 (-)
XLOC_022498 AL929087.1 coding downstream 138035 33219005 ~ 33219128 (-)
XLOC_022496 plxna2 coding downstream 318740 32579495 ~ 33038423 (-)
XLOC_022503 NA coding upstream 17098 33378523 ~ 33383864 (-)
XLOC_022504 NA coding upstream 45349 33406774 ~ 33442342 (-)
XLOC_022505 itga5 coding upstream 86200 33447625 ~ 33558161 (-)
XLOC_022506 NA coding upstream 246584 33608009 ~ 33618846 (-)
XLOC_022507 csrnp2 coding upstream 271816 33633241 ~ 33680265 (-)
XLOC_022497 BX470150.1 non-coding downstream 481503 32875546 ~ 32875660 (-)
XLOC_022495 NA non-coding downstream 820613 32496311 ~ 32536550 (-)
XLOC_022509 NA non-coding upstream 369764 33731189 ~ 33739111 (-)
XLOC_022513 CT025912.1 non-coding upstream 607441 33968866 ~ 33968988 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_03821989_03823336 SLC48A1A coding CI01000001 null 3821989 ~ 3823584 (+)