RNA id: TCONS_00045056


Basic Information

Item Value
RNA id TCONS_00045056
length 506
lncRNA type antisense_over
GC content 0.52
exon number 4
gene id XLOC_022503
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 33378523 ~ 33383864 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCGCGCGCTCCCTACAGTCCGGCAGAGGCGCCACCCCGCGCCGCGCTCCCGCCTCTGCTAGGGGCGCGCCCGTTGCTGCACTTATGGATTCATCCTTGCAGCTGCATGATAAACCTTGAGGGGTTGAGGAAGATCAGGGGGGCGTCTCCGTAACCCACCTTACTTACTAATGCAGGTGCCAAGGGACGAGCGCAGAGTGGAGCGGAGGAGTGTGTCTGCCGAACACATGACTGCTGGAGACTCTGAGGAGACAACAGTAAAGAAAGAGAGGAAGTCACGTTGGGGACAATCTTAAGATGTGTCCCTCCCTAAAAAAATCCTCCATGTGGCTGGAGGTCAGGAACATTGCATAACTCTGTTTAGACCCCGGCTATTGTTTCAGCAGAGCGGGCTTCCTTTCCTGACAGAGTAAAATATAACAACACTACGACTAATTTTGAGAGCTTTTCAGACTCCTGTTCCACTCTTCAATCTACAATAACAGAACAACAAGatgtaataaat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045054 lncRNA downstream 27541 33342144 ~ 33350982 (-) False XLOC_022501
TCONS_00044372 lncRNA downstream 27541 33342509 ~ 33350982 (-) True XLOC_022501
TCONS_00044371 lncRNA downstream 35697 33342144 ~ 33342826 (-) False XLOC_022501
TCONS_00045048 lncRNA downstream 41669 33256741 ~ 33336854 (-) False XLOC_022499
TCONS_00045050 lncRNA downstream 44244 33257671 ~ 33334279 (-) False XLOC_022499
TCONS_00045057 lncRNA upstream 22910 33406774 ~ 33420849 (-) False XLOC_022504
TCONS_00045058 lncRNA upstream 27627 33411491 ~ 33442194 (-) False XLOC_022504
TCONS_00045059 lncRNA upstream 27627 33411491 ~ 33442342 (-) True XLOC_022504
TCONS_00044375 lncRNA upstream 79353 33463217 ~ 33468329 (-) True XLOC_022505
TCONS_00045060 lncRNA upstream 224145 33608009 ~ 33617068 (-) False XLOC_022506
TCONS_00044373 mRNA downstream 17098 33357163 ~ 33361425 (-) True XLOC_022502
TCONS_00044370 mRNA downstream 27533 33337734 ~ 33350990 (-) False XLOC_022501
TCONS_00044366 mRNA downstream 340100 32579495 ~ 33038423 (-) True XLOC_022496
TCONS_00044365 mRNA downstream 433727 32579495 ~ 32944796 (-) False XLOC_022496
TCONS_00044364 mRNA downstream 486082 32579495 ~ 32892441 (-) False XLOC_022496
TCONS_00044374 mRNA upstream 63761 33447625 ~ 33558161 (-) False XLOC_022505
TCONS_00044376 mRNA upstream 249377 33633241 ~ 33654889 (-) False XLOC_022507
TCONS_00044378 mRNA upstream 249624 33633488 ~ 33640959 (-) False XLOC_022507
TCONS_00044377 mRNA upstream 249624 33633488 ~ 33640959 (-) False XLOC_022507
TCONS_00044379 mRNA upstream 270367 33654231 ~ 33679579 (-) False XLOC_022507
TCONS_00044369 other downstream 77104 33301304 ~ 33301419 (-) True XLOC_022500
TCONS_00044368 other downstream 159395 33219005 ~ 33219128 (-) True XLOC_022498
TCONS_00044367 other downstream 502863 32875546 ~ 32875660 (-) True XLOC_022497
TCONS_00044359 other downstream 1044409 32325967 ~ 32334114 (-) True XLOC_022488
TCONS_00044348 other downstream 1238565 32139843 ~ 32139958 (-) True XLOC_022484
TCONS_00044391 other upstream 355613 33739477 ~ 33744771 (-) False XLOC_022510
TCONS_00044400 other upstream 585002 33968866 ~ 33968988 (-) True XLOC_022513
TCONS_00044402 other upstream 594561 33978425 ~ 33986365 (-) True XLOC_022514
TCONS_00044409 other upstream 1860514 35244378 ~ 35256445 (-) False XLOC_022519
TCONS_00044432 other upstream 2480862 35864726 ~ 35864853 (-) True XLOC_022530