RNA id: TCONS_00044402


Basic Information

Item Value
RNA id TCONS_00044402
length 871
RNA type processed_transcript
GC content 0.46
exon number 5
gene id XLOC_022514
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 33977724 ~ 33986762 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCGCGTTCAAGGATGTGGCAGGTGCAGCATCCGGCTCGGGGTACCTGACGTACAGgGAGATACAGAACTCAACTGTGGGACAAGCAGGCTGGCTCTTTTCTCCCATCCACCCCAGGTTTAGGCATGCATGTGGAAATCAAAGATCCTGAAACCAAGgttaTCCTGTCCCGTCAGTATGGCTCTGATGGTCGTTTTACCttcacctcacacacaccaggAGAGCATCAAATCTGCCTCCACTCCAACTCCACCAAGATGGCACTGTTTGCAGGTGGAAAACTGAGAGTCCACTTGGACATTCAGGTTGGTGAACACACCAACAACTACCCAGAGATCGCAGCCAAAGACAAACTGACGGAGCTGCAGCTGAGGGTCCGACAGCTCCTGGACCAGGTGGAGCAGATCCAGAAAGAGCAGAACTACCAACGGTACCGTGAGGAGCGTTTCCGCATGACGAGCGAGAGCACGAACCAGCGTGTTTTGTGGTGGTCCATCGCTCAGACCGTCATCCTCATCATCACCGGCATCTGGCAAATGAAGCACCTCAAGAGCTTCTTTGAGGCCAAAAAGCTGGTGTGAAAAGCAGACAACAGAACAAAGACAATGACCCAAGTAACATTCATAATCGCTGTTTCGATTCTCAAGCATGGAAAAACTTCTCACTCCTtcatttcagtatttttttttttttaattcagttcgGTCTAACTTCAGCTTGAGCAGGTACATTTAGAGTTAATGATACCTATTTATCATTAAAGAAACATAATCAGAAATGCTTCATGTCACGAATGTCGTTCAAGTGTTCATATAATGAAGTAGTATgatataaaacaaatgttaaaccTTTTCAGTGACGATCACTATGGG

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0007030 Golgi organization biological_process
GO:0030134 COPII-coated ER to Golgi transport vesicle cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005793 endoplasmic reticulum-Golgi intermediate compartment cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040625-140 Predicted to be involved in Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and intracellular protein transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi apparatus; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human TMED4 (transmembrane p24 trafficking protein 4).

Ensembl:

ensembl_id ENSDART00000129801

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044397 lncRNA downstream 214150 33761148 ~ 33764275 (-) False XLOC_022511
TCONS_00044394 lncRNA downstream 228105 33747413 ~ 33750320 (-) True XLOC_022510
TCONS_00044385 lncRNA downstream 239314 33731189 ~ 33739111 (-) False XLOC_022509
TCONS_00045062 lncRNA downstream 239480 33731189 ~ 33738945 (-) False XLOC_022509
TCONS_00044744 lncRNA upstream 780956 34767321 ~ 34768151 (-) True XLOC_022515
TCONS_00045063 lncRNA upstream 1214327 35200692 ~ 35203084 (-) True XLOC_022518
TCONS_00044416 lncRNA upstream 1406742 35393107 ~ 35396760 (-) True XLOC_022520
TCONS_00045064 lncRNA upstream 1553995 35540360 ~ 35549662 (-) False XLOC_022523
TCONS_00045065 lncRNA upstream 1677487 35663852 ~ 35665582 (-) False XLOC_022525
TCONS_00044399 mRNA downstream 33828 33934877 ~ 33944597 (-) True XLOC_022512
TCONS_00044395 mRNA downstream 203116 33757173 ~ 33775309 (-) False XLOC_022511
TCONS_00044396 mRNA downstream 203181 33760406 ~ 33775244 (-) False XLOC_022511
TCONS_00044398 mRNA downstream 203280 33763958 ~ 33775145 (-) True XLOC_022511
TCONS_00044393 mRNA downstream 228118 33739691 ~ 33750307 (-) False XLOC_022510
TCONS_00044403 mRNA upstream 1040812 35027177 ~ 35069805 (-) False XLOC_022516
TCONS_00044404 mRNA upstream 1041388 35027753 ~ 35066948 (-) False XLOC_022516
TCONS_00044405 mRNA upstream 1041388 35027753 ~ 35082494 (-) False XLOC_022516
TCONS_00044406 mRNA upstream 1064792 35051157 ~ 35064785 (-) False XLOC_022516
TCONS_00044407 mRNA upstream 1064794 35051159 ~ 35066816 (-) True XLOC_022516
TCONS_00044400 other downstream 9437 33968866 ~ 33968988 (-) True XLOC_022513
TCONS_00044391 other downstream 233654 33739477 ~ 33744771 (-) False XLOC_022510
TCONS_00044369 other downstream 677006 33301304 ~ 33301419 (-) True XLOC_022500
TCONS_00044368 other downstream 759297 33219005 ~ 33219128 (-) True XLOC_022498
TCONS_00044367 other downstream 1102765 32875546 ~ 32875660 (-) True XLOC_022497
TCONS_00044409 other upstream 1258013 35244378 ~ 35256445 (-) False XLOC_022519
TCONS_00044432 other upstream 1878361 35864726 ~ 35864853 (-) True XLOC_022530
TCONS_00044435 other upstream 2012182 35998547 ~ 35999332 (-) True XLOC_022531
TCONS_00044457 other upstream 2335645 36322010 ~ 36322124 (-) True XLOC_022538
TCONS_00044460 other upstream 2427333 36413698 ~ 36418022 (-) False XLOC_022539

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00020893 True 2424 mRNA 0.49 5 CM030127.1 35930622 ~ 35937150 (+)