RNA id: XM_021565387.2


Basic Information

Item Value
RNA id XM_021565387.2
length 5315
RNA type mRNA
GC content 0.54
exon number 13
gene id kansl1a
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 25096486 ~ 25156255 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGAAATGTCTCCCGCCTACCAGAattcacacaccaccaccacttctGTTTGTCAGACTCAAATCAGAGGGAGAGGAGCAAGCCGCCATTTTCTGAGCGTCTCTCCCTAAAACGAGAAAATAGGCTCTTCTCAAACACCAGAAAAACTGGCCTTCTCAAACACCTTAGGGTGTGGGGAACGGAGTTTGCGACAAAGGATTGTTGTAAAATAATTAACAGAAGTATTTTTGACCAGAAAGGACCATTTTTACACTTACTTGCTATTACTAGTAGCGAGGcgcgctagctagctaactttagcgcGTTAACGTTAGTTAGCAAGCAAGGTGTAGCTTGCTACGTTAGTTGATTCGCCCATTGCTTGGTTCCGGAACGAATCTGGAGCGCTTGAAACGGGGTCTTAAATAAAAAAGGATTGCATTTTTAGAAAGGGGAATGGCTGATTAATCGATTCAAATCGTGTTTTGTTGTGGTATCCGTTTACATTTCCTTCAAAAACTGCGGGGGATTGTTGCCGAAATTCACTCGGATAGTGCGCCTCGTCACGTGGCTGTCCTCTGGCAGGGCAGTAAGCGGGTGGTGTGGAGCAGGCCGCGGAGTCCATCTCTCTGCACTGCATGGCTGCGATGGCGCCCGCTCTCACCGACGCCCCAGCCGAAGCTCACCACATCCGCTTCAAACTGGCTGCCCAGTCCTCCAGTCTCTCCCCGGGCAGCACAGAGAACGGCAACACAAGCAACATCCTCATCCACAACAGCAGCGGCACCGGCAAATGCAAGGTCTCCGCCGCCGACGAACACTCCCACAACTTTTGCAGCGGGAACCAGGAGCAGCCGACCCAGCAGCATCAGCAGTCCCCGGCCTCAACCCTGGGCAAGCTCCAGCCGCTGGTAGCCTCCTACCTGTGCTCCGATGTGACCCCCGTCCCCTCCACCAAGGAGTCTATTAAACTGCAAGGAGTCCTCATCAAGCAGTCTGTGCTGAAGAGTCACGGCATCCTGCCCAGCTCGCTGTTCAACGGCGGGGGAGACTTCCTGCTGAGTAAGCGGCAGACTCTGGAGCTGTCCGGAGGACAACTGAAGAGCCTTATGAGCAGCAACGGCGGTGGCCAAGCCGTGGCGGCCATCAATGGCCTAGCCAAGAAGCTGGCCATGTCCGGCGCAGCGGGCTCCGTGGTGGCGGTGAACAGGAGCAAACCCTCCGCCAGTGCTGAATCTCAGCCCCTAATACCTCCACTGGACTCCAAGGCCTTCACGGGCGCCATCTTAAAGGGACCCGTCAAGCAAAAGCATTCCCTGGGGGTTTCTCACAGCGCAGGAGGAAATGGCctccatcagcaaccagctcaCTTTGTGGCGCCTGATACATCCTCAAATCAGCTGAACACACCCTCAAATCAGCTGATGCTGCCTGTGACTGACTGGGAGAGGGTAGGCAGAAGCCAGCAGGGGTCCCCAGTCTGCTCTCCGGCACCCCagtccccctcctccaccctctgcaGCCTGGACGCCCAGGTGAAGGAGCGCGCTCTGCTCAACCGCAGCCGCCAGGGTGAGATCGAGGGCCGGATGCGGAGGCTACGCAAGCGGCTGCAGGTGGTGCAGGCCAAGCAGGTGGAGCGCCACGTTAAGCAGCAGCTGGGGGGATTTCTGGACTCATCCCTCAGCATGCTGCCTCCCGCCACCACAACGCGCAAGGGGGACACCACCGCCACATGGCGCCCGGGCCGGCACTCCTTGGGAGCCAGGGACAGCCTGGGCAGGTTCTTGAAGAGCGGCTCCATCCCCACGGAGTTGGAGCGCCTCTACCTCAGCGGCACGGCCAACTTGCACGTAGCTGAGAGCAACTTCGACTCGGATGTGACGGAGAGCAGCTCGGGAGGGGACACCGACCTGGAGGAGGAGGTGCTGACCAGAGTGGACATTGAGCAGCGGCACATCAAAATATGGAAGCGGGCGGAGAGTCGCTACACCATCGAGCGGGCCTCCATCATCAGCCACTGGAACTGGCTCCAGGCCCACATCTCAGACCTGGAGTACCGTATCCGCCAGCAGACAGACGTCTACCGACAGATCCGTGCCAACAAGGGCTCAGTGGAGTTGGGAGGTGTGGCGCCCATTGCATTGGTGGTGGGCGGGGCAGGAGTTAAGACTGAGCCTACTCCCCAGGACTGTCAGGTCACCATCACAGAGTCTGGACCCTGGAGAGGCCAGAATGGCAGGCCGGTCAATGGGGTCCTCAACAGggtGTCAGAGAGTAACACCAAACACCAACCCAGCCCCAATGACAGCACCTGTGTGGCCGCCCGCACGCGCCCCTTACTCAACTGCAGACGACGGAGACTTGTACAGCCTAACACAGTTCCTAACCTCAATGGCAAGGTCCCGAGAACCAGCGCTATCCTGTGTAGCTGCAGGGTCAACCCCTCCTCCTGTGTGACATGCGGGGGTCGCCCCAGCGCACCCAGAGAAGACCCCCAGTACGAGCTTCCCTCCCTGGAGCGCTTGTCCCACCTGGACCCGGGGGTCCACCcaatcctctccctccctgacgATGTGTGTATGAGCCTGCGGCTGCAGCAGGTGATGAAGAGCCACTGGCAGGGCAAGGCCCCCGAGAGGACCAAGCCCCTCAAGAAGCTCTCGCTCAAACACAAGCTCTCCTCCAAAGACAAGCACATCAAGCTGGCCAACTCGCTCATGGCACACAGACTGTCTCACTATAAGAGCCGGTCTGATAAGATGCAGCGGCGACAACATCACCACTTGGATGGCAACGGTGGGGTGCTGAGCGCCGCCAGGCTGGAGGGCCAGGCCTTCTGTAAGGCCGAGCGGCTTCTGCATGGCCTCCCCTCACCCTCCACAGGGCCCTATGACCGGAGCTACAGTCGCAAGAGGCCCCGTGAGCACTTGCTGGACAGGACCCACGGCTCCACCCCAAAGCTCTTCCTGGACTCGGGCAGCCCCTGCTCGTCCTTGGCCAGCCTGCACTCGTCTCTCCACAGCCCCTCGCTGACCCGCCAGCTGTCCACCTCCTCGGAGAGCTCCACCCCTATTGGCCCCAACAGTCTCAGCTTCTCCAACACCCCCCCCATCCGTAGGAGGCGAGGCGAGAGCTCCTTTGACATCAACAACATTGTGATCCCCATGTCAGTGGCGGCCACCACGCGCGTAGAGAAACTACAATACAAAGAGATTGTCACCCCCAACTGGCGGGAAGTTGACATTTTCTCCCAGCCCATGGCAGAAGAGGAGAACGACACAGAGatggaggACCTCTCCGACGCGGCCTTCTCCCAGCTCCACCAGCCATGCCAGGATCAGGAGCGTTCCCGCTGGACCTGGATGGCCCTGGCCCCCGCCAAGAGGAGGGGCAGCAGGTCGTACAAGTCCATGGATGGCAGGACCACACCGCTGCTGTGCAGCACCAACCCGCCCACTCCCCAGCCGGCGTCCCCTGACCCTGGACACTGCCCCCTGCTGCACGACTACAGCCACGTGGCGTCGCCCATAAGTCCGGACGCCACCTCCAACCCCCACACGCCGTGCTCACGCGACTCCCACCGCCTGCTGTCCAGTGAGGACACGCGCTGCTCCACACCCGACTTCACCTTCGAGGAGCGGACGGTGGCCCCGTGGGAGCATCGAAACTTCCCCCTGCCGGAGGACCCCGCTCCGGAGCCCGAGGTGGAGGGGGAAGATGAGATGAGGCGGTCGCGAATGCGCAGCGTCTCGTGTTGCCCGTCGACAGGCTATGACACAGACAGCCCCTTGCCTTGTGATGACGACGCCCCCAAACAGAAGGGCCATGCCCACCAATGAATGACTGACAGGCCGAGGTCTTCCTCAACCCCTACCCCTCTCTGGCATTAACAAGCAGAACCTCAAACTGAGAAAAAAGGCTATTTAAAAGGGTTCCTGTTTGATATTCAAACACCAGTCTAATACTATTTCACAGTTTTTAGTGAATATTATATGGAAGATGGAAGCCTTTCCCTACACTCTTGATGTTACAAAAATTATTTCTGTTGTAGGCTAAAACGATGTACATGGGGCTTAGTGGTGTTCCATATGTGGCGTGTACACTTGTAGCGCACTATGTAGCTGACTCCTCAAAGTATGGCCAAAGGGTGTTTTTCTATTGACTAGTTTGCTTGTATTTCCCATGTACATTTTCTAGTGGTGTGACaaataacaaaacaagaaaaaaaatccTCATACTCCCAAATTAACAGGTACATTTGGGATGTTTTGTGTCCTTTTTTCCCtctaggggtggggggggggtattagaaaTTGTGGAGCACATCTTCTTTCATTGCCAAGTAGTTTTGTTGGGTTGCATGTCTTTTTTTGTTTGTCATTCCTTTCCTGACACTTTTTTTTCGTCTTTTTTTTGTATCGTCTGTTCAATTAagtctttctttttgtgttttggACAGTAATCATTCCTTTAGAAAATATCTTTGCAGAGCACCCGGCGCCTCTGATCCCACTGAGCTCTCGCTGTCTTGTTTGCGGGAGTGACTGCGGTAGAGAGGAACCTGGGTATCCTAAGCACTTGTCCAACCTACAGGGAGCACTACTGCATGCTAAACCATGCTAATGCTAATCAAATCACCAGAGCACATAATTGAACAGGAATTTGCCACCCAGGGAAAGGAAGTGGATGATGATCAGGGATGACCCTAATATCGATTTAGTTTACTTTCCCCTTTTCTCAAATTATCATTGGTGTAGTATTATGTCAACAtagtaaaatgtatttcaaatggtAAAATCACACAGCTAATAGCTTTTTCATTTTGTTTTCCGGACATTGGTATTAGACTACATGCTGGTGAATTATTGGACAATGTTTGTTAATGTTGATAATTAAGTTGTTTCTGGTTCAACTTGACAAGAAAAAGTGTGTTCTCTAGTTTCATATGTAGCAGCTCTTTGCTAGAAGCAACCCAGACCTCAGGTTTTACAGTTAAGGGAATATTTCTAATGCTGAGAAAATATTTGTCCCCCCTTCCCCCCTAAGATCGATCCGATCTAAAGAGACTACTCTGTTGCAGAATGCTTTTTTTGTGTTGCCACCCCACAATGTCATAACCACACCACCATTTCCCCTCGTAACTAATTGCTATGCAAAATCTATGGTTGTATAATTTTACACCTGTTTTTACGCCACAGTCCTTCAATCCCTGTACTTTGTTTTGTAGTTTAAGCAAGATGTAAATGTACTGGTCCAATTGTTGCAGCAGTTAACCTAATCAAAAGCAGAATTGTTTTTGTAAATAGTACCATTAAAACATTTGTTTAACTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1549997 lncRNA downstream 8826 25081217 ~ 25087660 (-) True G1356006
TU1549986 lncRNA downstream 32256 25061080 ~ 25064230 (-) True G1355995
TU1549876 lncRNA downstream 72511 25022395 ~ 25023975 (-) True G1355893
TU1549961 lncRNA downstream 79215 25017071 ~ 25017271 (-) True G1355971
TU1549912 lncRNA downstream 173352 24904453 ~ 24923134 (-) True G1355924
TU1549880 lncRNA upstream 3169 25151029 ~ 25151283 (-) True G1355897
TU1549873 lncRNA upstream 3802 25151662 ~ 25156249 (-) True kansl1a
TU1550008 lncRNA upstream 12768 25160628 ~ 25165093 (-) True G1356017
TU1550029 lncRNA upstream 50613 25198473 ~ 25198719 (-) True G1356038
TU1550058 lncRNA upstream 115087 25262947 ~ 25263263 (-) True G1356067
XM_021567333.2 mRNA downstream 62495 25025557 ~ 25033991 (-) True ghrhr2
XM_036946594.1 mRNA downstream 136097 24914158 ~ 24960389 (-) True scn4aa
XM_021565350.2 mRNA downstream 198776 24892069 ~ 24897710 (-) True cd79b
XR_005036485.1 mRNA downstream 207409 24885148 ~ 24889077 (-) False LOC110491708
XM_036946598.1 mRNA upstream 66066 25213926 ~ 25247652 (-) True acsl5
XM_021567360.2 mRNA upstream 220673 25368533 ~ 25385777 (-) True tectb
XM_021567335.2 mRNA upstream 248669 25396529 ~ 25399484 (-) True LOC110492860
trnac-gca-11 mRNA upstream 408656 25556516 ~ 25556587 (-) True trnac-gca-11
XM_021565399.2 mRNA upstream 445005 25592865 ~ 25615004 (-) True LOC110491719
TU1549855 other downstream 207842 24884866 ~ 24888644 (-) True LOC110491708
TU1548732 other downstream 1062076 24009875 ~ 24034410 (-) True LOC110492858
TU1548290 other downstream 1637939 23451825 ~ 23458547 (-) True G1354433
TU1548204 other downstream 1777094 23318569 ~ 23319392 (-) True G1354351
TU1547563 other downstream 2051725 23043249 ~ 23044761 (-) True G1353762
TU1552022 other upstream 1579435 26727295 ~ 26727828 (-) True G1357833
TU1552016 other upstream 1581444 26729304 ~ 26743455 (-) False LOC110491745
TU1553460 other upstream 1963923 27111783 ~ 27113401 (-) False G1359119
TU1553462 other upstream 1964374 27112234 ~ 27113401 (-) True G1359119
TU1553687 other upstream 2209424 27357284 ~ 27359562 (-) True G1359321

Expression Profile