RNA id: XM_021565571.2


Basic Information

Item Value
RNA id XM_021565571.2
length 4841
RNA type mRNA
GC content 0.49
exon number 18
gene id LOC110491806
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 30924605 ~ 31019315 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGTaggttgacctctctctctctccttcggcGTACAGAGCAAGGAAGGCTCGTAGTTTCTTTCTGGGCAAAAGCGTAGAAAGAGGGAGACACTGAGGTTTGATTGGCGGAGGAATTCAGAGCCAGGAAACGGATCGAATTTCAGGGGGGAGTGATACCCactggagtgagggaggagggggttgtgtgtgtgtgtgtgtgaggacgtAAGGAGCAGAACAACTCTTCTAAAACCCGACAAAGCGTCTGAGGACAGTACTACTATGATTTTCGGGGAAGAAGACGTTCTGCCGTGAGAGATCATACATTTATGGATTCTTCTTTTtggaatgtatatatatttttttacgcaTTACTTCTTCATAAAGTACATAGGCCCTTCGTTTGGATGAAGAGTGCGCTCGCGGTGGAACGCTGACATGTTTTGAGTTGAAGAAACTGTATGAACTTGCTGAATAAGAAAAGTTTTGGagacgtaacgttagctagctaactatttcaAGTTATTTTCAAGGATGTATGCATTTCAATTCAACATTTTTCAAGTGCAATGGAACACCAGTAATTTCGGGATTTAAGAGTCTCGCCAGTGATCTGAGTTGTTGCTCGTTGGATTTGAGGGTAATAAAAATCGTTTCTTGGCATTTTTGGTAATGTGAAGAGAATTCGCTCCGTGAGGACTATAGGGTACACGCCTCCTGCCTTTTCCGTGCATGCGACTCGGAGGTCTTTCAGACTTCGTAGTTATTCGTGCGTTTCCTCAGCCCAGGTGATTGGGGGAATTCACAGTGAGTGACAGGCCACACAGCCTGCAGTTGATGATTGGGTGGAGCCCTTCAGATgggatcagtgtccagggggagGCGGAGCCTGAggagggggggatgggggggggactTGCCCTCCTCTAACAGGATGGCCTCGTGGGCCTGGCTGCTCACCGCCGTCCTGCTGTCCCTAGTGATGGCTACTGTGGAGAGGCCACCGTACACTGTCGCCAAGGAAGAGGCTACACTAGAACCTGAAGAGCCTCCGACCAAATACCAAATCTCTAAGCCCACCGTGTGCTCGGTGCACCCGGGGGAATTGCTGAAGCTCAACTGCCCTCTGCCCGGGGAGGTGGGGACCATCACCTGGACTAAGGATGGTTCCTCTCTGGGGGTCAACAACCGCACCCTGATAGAGCGGGAGGTGCTGCAGATCCGCGACGCCTCGCCCAAGGACTCGGGCCTGTACGCTTGCAGCACCGTGGGCCCTCAGGGCAGTGACACACTCTGCTTCATAGTGAACGTCACAGATGCCATCTCGTCTGGGGACGATGAGGACGACACAGAGCGATCAGAGGACGTGGGGGTGGACGGAGAGCAGATAAGGGCGCCCTATTGGACGATGCTGGAGAAGATGGAAAAAAGGCTACATGCTGTACCTGCTGCCAACACAGTCAAGTTTCGCTGTGCTGCCGGGGGCAACCCACGTCCTAAGATGCGCTGGCTGAAGAACAGCCGACCATTCCGACAGGAGGACCGCATGGGCGGGTACAAGGTGCGTCACCAGCACTGGACCCTGATCATGGAGAGTGTGGTTCCATCCGACAAGGGCAACTACACTTGCCTGGTGGAGAACGCATATGGCACCATCAACCACACCTACACCCTGGATGTAGTGGaACGGTCCCCTCATAGACCCATTCTCCAGGCAGGGCTGCCAGCCAACACCAGTGTGAATGTAGGGGAGGACGCACGCTTCGTGTGTAAGGTGTACAGTGATGCTCAGCCCCACATCCAGTGGCTGCAGCACATCCAGAAGAATGGTAGTCGCACCGGCCCAGATGGACACCCCTACGTCCGTGTACTGAAGACCGCAGGTGTAAACACCACGGACAAGGAGATTGAAGTCCTCTACCTCCCCAATGTCACTTACGAGGATGCTGGGGAGTATACCTGCTTGGCGGGTAATTCTATTGGGATCTCCTATCACACTGCTTGGTTGACGGTGCTTCCAGCCAATAAGGAAGAGACAGTGACGGGTCTGACATCACCTGACTACGTGGAGATAGCCATATACTGCATCGGGGTGTTCCTGATTGCCTGTATGGTGGTCATCGTGGTGGTGTGCCGGATGAGAAATACGACTAAGAAGCCTGACTTCGGGAACCAGCCAGCAGTCCACAAACTCAGCAAGCAGATACCTCTGCGTCGCCAGGTGTCAAATGACTCCAGCTCCTCGATGAACTCCAGCACCCCATTGGTCCGCATCACCACACGACGCAGCTCAGCCGGCCATGACGACCCCATCCCAGAGTACGACCTCCCAGAGGACCCACGCTGGGAGTTTTCCAGAGACAGgtTAACTCTGGGCAAGCCACTGGGCGAGGGCTGCTTTGGCCAGGTGGTGATGGCCGAAGCATTGGGCATTGATAAGGACAAGCCCAAGGAGGCCGTCACAGTGGCTGTGAAGATGCTGAAAGACGATGCTACAGAAAAGGACCTGTCTGATCTGGTGTCAGAGATGGAGATGATGAAGATGATCGGTAAACACAAGAACATTATCAACCTGCTAGGGGCCTGTACACAAGATGGCCCTCTATATGTGATAGTGGAGTATGCCTCTAAAGGGAACCTGAGGGAGTATCTACGTGCCCGCAGGCCCCCTGGCATGGAATACTCCTACGATATTACCCGCTGCTCAGATGAACAGCTCACCTTCAAGGACTTGGTCTCCTGTACCTACCAGGTGGCACGGGGCATGGAATATCTGGCCTCAcagaagTGTATACATAGAGACCTAGCAGCGAGAAACGTCCTGGTCACAGAGAGCAACTTCATGAAGATTGCTGACTTTGGCCTGGCTAGGGACGTCCACAACATCGATTACTATAAAAAGACAACTAACGGTCGTCTCCCGGTGAAGTGGATGGCTCCAGAGGCACTGTTTGACCGTGTGTACACTCACCAGAGTGATGTCTGGTCATTTGGGGTGCTGATGTGGGAGATCTTCACCCTGGGGGGTTCTCCGTACCCTGGTATCCCCGTAGAGGAGCTCTTCAAGCTGTTGAAAGAGGGCCATCGTATGGACAAGCCTGGCAACTGCACCAATGAGCTgtacaTGATGATGAAAGACTGTTGGCATGCCATCTCCTCCCACCGGCCCACCTTCAAGCAGCTGGTGGAGGATCTAGATCGCATCCTCACCCTGGCCACGAATGAGGAGTATCTGGACCTGTGTGCCCCAGCCGAGCAGTATTCTCCCAGCTTCCAGGACACACACAGCTCCTGTTCCTCCGGTGACGACTCCGTGTTCTCCCATGACCCCCTGCCAGACCAGCCCTGCCTCCCCAAGTACCAGCACATCAATGGAGGCATCAAAACATGAGCCCTCCCCTCCTCAATCCCCCCCATCCAGCTCCAGCctgacctgcccccccccccccccccacaaagcgACATTTCCATAGAGAGAAAATTAGATATACCCCCACCACCAACCCCACAAACCTCCTGGCCCCCAACCCCCCTCTGGCTCCAAATGGACTAACGGACCCAGATGGGACTGGGCTGGTGGTAGTGCTGCTTTTagaactgaacacacacacacacatttgcacacacattcatacacatgTTCAAGGTCTTAAGAAGAGGACCGGGACCCTTCATCAGTGTTCCTCTTGTCTGACTGAATGAATATCTGTTCCCAAGggtccacctcctctcctctcttgccgTTTTATTTGTTCCGGTTGTTTTCTACTAGAGTTTGGAATTTACTATTTTTGCGTTTCATGATTCCATTCCGTTGGCTGGCATTCCAAGACTTTTGCTTGTTCCCAGAGGGAAAATATGGACCGTAATGAACGGAAAAAACAAGGGACTCAAAAAGAGGACGACAAAATAGGAAACTGAAAGGACTGAAAGAAAGAATCAACTAACAAAAACAGATGAATAGGAGAAGAgcgcatacagacagacactgcCTCTTCTTTATATTTTGTAATATTGTCTTGTTTCTTTATACTTTCTCTTGATAAGTCCACacacttattattattatggagaaaaataatatacagtatatagggcTGGGTATATTTGTAAATATATTcaaatatgtataaatatatattatatatttacagTGAATTATTTTTTGTATGGACTCCAGAattatcccccctctcccctcctccctcattgGGTTTGAGACTGGTGTGTCATCACCCAGGTTATGTTTCTGTTCACTTGTGTTCTtttaaacacaacacacacaaatataggcatgcacacacatacgcacacacacaaaacacacacactctcattcaatgACACAGTGGAGTATTGGCTTTCAGGGAAAGAGGTAGCTTGTTAATTTATTGAATTTTTTTTtacgaaaaaaataaataaaaaataaaatagaaatagtaTTAAAGATATGCTATTAATGATGCTGatattaaataataaataatccaTTATGTTTATTATCGTAATTTAAAATTCTCTTTCAGAGGTAACAGAAACAAAAGCTATTTTTAGTAGTGTACTGTACATTTTGTCTGCTAATCCCTTATGTAGATAATGCAGATTCTATCCAGTCATTTTACTCTTAGGTTTGCATTCGAAATTATATGATTTCTGGATATTTATAtatgattgaaaataaaaattattTTGGAACCACCCACTAGCAATCTGTAAGATTCCAAATTCACACCAGAGGGTTCAAAGTTGAAAAACAAAGTATTAAatcattcaagtatttttttttctactgGACCAAGTTTAAGATGTTCTTTGCTAGTGTTCTTgacacatttgcaaaaataaagATGGAAAAACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1557359 lncRNA downstream 168827 30755478 ~ 30755778 (-) True G1362759
TU1557293 lncRNA downstream 214278 30709871 ~ 30710327 (-) True G1362694
TU1557292 lncRNA downstream 214932 30708963 ~ 30709673 (-) True G1362693
TU1557288 lncRNA downstream 216919 30707448 ~ 30707686 (-) True G1362689
TU1557285 lncRNA downstream 218069 30706337 ~ 30706536 (-) True G1362686
TU1558408 lncRNA upstream 279019 31298332 ~ 31298540 (-) True G1363747
TU1558414 lncRNA upstream 284456 31303769 ~ 31304637 (-) True G1363753
TU1558420 lncRNA upstream 293931 31313244 ~ 31313454 (-) True G1363757
TU1558423 lncRNA upstream 294778 31314091 ~ 31321815 (-) True LOC110491807
TU1558457 lncRNA upstream 326662 31345975 ~ 31346383 (-) True G1363777
XM_036946709.1 mRNA downstream 380733 29955606 ~ 30543872 (-) False LOC110492868
XM_021567341.2 mRNA downstream 790604 29955606 ~ 30134001 (-) False LOC110492868
XR_005036503.1 mRNA downstream 1051023 29855177 ~ 29873582 (-) False LOC110492894
XR_002469089.2 mRNA downstream 1061532 29855177 ~ 29863073 (-) False LOC110492894
XM_021565563.2 mRNA downstream 1222012 29674817 ~ 29702593 (-) True LOC110491798
XM_036945882.1 mRNA upstream 110804 31130117 ~ 31182991 (-) True LOC110492870
XM_021565588.2 mRNA upstream 251296 31270609 ~ 31285633 (-) False LOC110491809
XM_021565589.2 mRNA upstream 251296 31270609 ~ 31285633 (-) True LOC110491809
XM_021565590.2 mRNA upstream 285770 31305083 ~ 31307541 (-) True LOC110491810
XM_036946714.1 mRNA upstream 294781 31314094 ~ 31445743 (-) False LOC110491807
TU1556170 other downstream 999451 29923871 ~ 29925154 (-) True G1361619
TU1555797 other downstream 1427050 29497113 ~ 29497555 (-) True G1361290
TU1554186 other downstream 2743665 28177715 ~ 28180940 (-) True taok2b
TU1554168 other downstream 2760378 28163463 ~ 28164227 (-) True G1359763
TU1553783 other downstream 3396468 27527163 ~ 27528137 (-) True G1359412
TU1558520 other upstream 620124 31639437 ~ 31650697 (-) True G1363836
TU1558829 other upstream 866436 31885749 ~ 31886112 (-) True G1364105
TU1559113 other upstream 999481 32018794 ~ 32019498 (-) True G1364348
TU1559908 other upstream 1615152 32634465 ~ 32635511 (-) False G1365099
TU1559909 other upstream 1615250 32634563 ~ 32635511 (-) True G1365099

Expression Profile