RNA id: NM_001160474.1


Basic Information

Item Value
RNA id NM_001160474.1
length 1626
RNA type mRNA
GC content 0.55
exon number 11
gene id LOC100301636
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 52389226 ~ 52393138 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACAGAGCAACCATGGGCAAACTACTCATCTGCGTTGgACTGGCTCTCCTGCTGCATGCACAGCTAGGATCCTCCTACATCCTATCCTGTTATTTCACTAACTGGGGCCAGTACCGGCCAGGAGCAGGCAAGTATTTCCCCACCAACGTGGACCCCTGTCTCTGTGACCATCTGATCTATGCCTTTGCCGGCATGGCCAACAACGAGATCAAGACCTACGAATGGGACGATGAGAAACTCTACGGACAGTTCCAGGCTCTCAagaaccaGAACAGCAACCTGAAGACTCTGCTAGCCATTGGAGGATGGAATTTTGGCACTCAGCCgtTCACAGCAATGGTGTCCAGTGCAGCCAACCGCCAGACGTTCATCAGCAGCGTTATCAAGTTCCTGAGACAGTACCAGTTTGACGGCCTGGACATTGACTGGGAGTATCCCGGATCCAGAGGCTCCCCACCCGCAGACAAGGCCAGATTCACCACCTTGCTGCAGGAGCTGATGGCTGCCTTTGAGGCTGAAGGAAAGAACACCAACCTTCCTCGTCTGATGCTGACTGCAGCTGTGGCTGCCGGAAAGGGAACCATCGACACCGGATACCAGATCGCCGAGATTGGAtccgtGTTGGACTACCTGCATGTGATGACCTATGACTTTCATGGATCTTGGGAACACAACACTGGAGAAAACAGCCCTCTCTACAGAGGACCAGCTGATCAGGGAGATTACATCTACTTCGATgtgGACTATGCTATGAAGTACTGGAAGAGCAGTGGTGCCCCCGCTGAGAAGCTCCTGGTTGGATTCCCCACCTACGGCCACACCTTCCAGCTGGCCAGTGGCTCTAACACTGGAGTGGGCGCCCCCGCCACTGGCCCCGGCCCGGCCGGACCATTCACCAGACAGTCTGGCTTCCTGGCCTACTACGAGatCTGCACCTTACTGAAGCAGGGCGCTACCCAGGCCTGGGACTCTGCCCAGATGGTGCCCTACGCCTACACCCAGCAGAACATCTGGGTTGGATATGACAACATCAAGAGTTACCAGGACAAGATCGAGTGGCTGAAGAACACTGGCTTCGGAGGAGCCATGGTGTGGAGTCTGGATCTGGATGACTTCTCTGGAACCTTCTGTGGACAGGGCAGATACCCACTGATCAACACCCTCAAGTCTGGACTGGGAACCGGAGCtgGTTGTGCCGCCCGTACGGGCCCCATTGCCCCAGTGACACCTGCCCAGCAACCACTCAACCCCCAACAGCCCGGAGGTCAAGGGGGCAGCAGTGGCAGTAGCAGTGGGGGATCTGGCTTCTGCGCCGGCAAGGCTGACGGCATGTACCCTGACCCCACCAATAAGAACAGCTTCTACAATTGTAGCCAGGGCAAGACCTACGACCAGCACTGTGCTGCCGGTCTGGTGTTCGACATCAGCTGCAAGTGCTGCAACTGGGCCTAAAAAAACCACGGTTCCCCCCTATTAATGTTTCCTTCCCCCTCTCGTATGTCATGAAGGAGCTGGGTCTAAAGGTTTTGTGGTTGTTAGGTCCACTGATGTCATGGCCCATTCTAACATCAGCTCCACTTACCATTTAAAATCCACTCCAATAAACATCCACCATATAAATTCAT

Function

GO: NA

KEGG:

id description
K01183 E3.2.1.14; chitinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1671801 lncRNA upstream 212268 52176739 ~ 52176958 (+) True G1461331
TU1671771 lncRNA upstream 258416 52130593 ~ 52130810 (+) True G1461302
TU1671768 lncRNA upstream 262175 52126815 ~ 52127051 (+) True G1461299
TU1671635 lncRNA upstream 276103 52111723 ~ 52113123 (+) True G1461175
TU1671760 lncRNA upstream 279651 52109215 ~ 52109575 (+) True G1461292
TU1671921 lncRNA downstream 12203 52405341 ~ 52405572 (+) True G1461440
TU1672467 lncRNA downstream 21974 52415112 ~ 52415333 (+) True G1461938
TU1672481 lncRNA downstream 29030 52422168 ~ 52423010 (+) True G1461948
TU1672559 lncRNA downstream 110037 52503175 ~ 52503874 (+) True G1462021
TU1672699 lncRNA downstream 312185 52705323 ~ 52705583 (+) True G1462159
XM_036950114.1 mRNA upstream 8102 52377165 ~ 52381124 (+) True LOC118936244
XM_021568762.2 mRNA upstream 20876 52364095 ~ 52368350 (+) True LOC110494066
XM_021568757.2 mRNA upstream 25233 52342058 ~ 52363993 (+) False zc3h11a
XM_021568764.2 mRNA downstream 5417 52398555 ~ 52402423 (+) True LOC110494068
XM_021568766.2 mRNA downstream 51577 52444715 ~ 52454863 (+) False zgc:113307
XM_021568767.2 mRNA downstream 51578 52444716 ~ 52454863 (+) True zgc:113307
XM_021568768.2 mRNA downstream 100633 52493771 ~ 52499544 (+) True LOC110494072
XM_021568769.2 mRNA downstream 246484 52639622 ~ 52699632 (+) True LOC110494073
TU1670644 other upstream 1298337 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 1491782 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 1612154 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 1953520 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 2205530 50181165 ~ 50183696 (+) True LOC110494957
TU1674769 other downstream 1780876 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 1863243 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 2078567 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 2078807 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 3603510 55996648 ~ 55998174 (+) False G1466124

Expression Profile