RNA id: XM_021569161.2


Basic Information

Item Value
RNA id XM_021569161.2
length 7635
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110494244
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59258342 ~ 59266492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actttttgccccactgtatatactgtactcgataccatctactatatcttgcctatgccgttctgtaccgtTCTGTACTCATTCATTattctttatgtacatattctttatccctttacacttgtgtgtataaggtagtagttttggaattgttaggttagattactcattggctattactgcattgtcggaactagaagcacaagcatttcgctacactcacattaacatctgctaaccatgtgtatgtgacaaataaaatgttattttattttactggTATGAGACTCTCACCACCTCTTTCCCTGTCAAAACAGACACCATCAAGCTGCTTGGGGTCACCTTCCAGAGGGATGGAGATGGCTCCGTCAGCTGagaggagaccatccgccatgTCCAAGACTGTGAATGAAGCGCATGATCCCTCACAATGACGGGTCAGGTCTGCCCTCGGCTGGTCTGGCGTCCTGGAAGTACAAGGACATCATGACCCACATCCGCTCCAAGGACACCATTGCACACCTTTGAGCCAGCTCAGCCGTGGACCCACAACAGGCATGGTTAAACATCAATCACCATGGCATTACAAACTTACAGAAAGAACTCTCATGGAAAGCTGTTCATAGTTGCCTCCCCACTAGGAAATGAATGTATAGACAGCACATAGCACATACAGAGAGCTGCCCCCATGGATGTACTGATACTGAAAACATCTACCACCTGTTTGCTGAGTGTACCATGGCCAGTCGGGTTTGGGCCCCGTTTGTTCTATCTCCCTCAACAGGTTGCTGACCATACCTCACTTGACAGCGAAGAACATCCTGAACGGTCCACCTGGTGGATGCACCACCACTCAGCTCCGCCAGCAGTGAAGGATCATCGGTACCATCAAGCAGGTCCTGTGGGAGAAAAAGTACAACAGGTTCTACCAGCAACAAACTGTGGAGCGAACGACCCTGAGGTGGAGGATCACCATCCTTCCAGCCGACCAAGACAAACCCCAGACCCGTCCTCCTGTCTTCATTTCCAGCCTCGCGGGACCAAAGGGGAATGCCACAAATGACCTCTGGGTCTAGGGCTCCTCTCCGCTCCCCTCTGCAGACTCAGCACTAGCCCAAGCACCAGTCCAGATCCCGGTTTCCAGCATAAACCCACCAAACGAGGTGTGGAGACACAACACCAAACCTTCACCCGGAGCGAGCGGACCACAGGGAAGTACCACCATTGACATCTCAGTCTAGGGCCCCTTTGTGTGTCTGCTTGCTCCTCCTGTTGTCCTTCCTCCCCTCTACAGACCCAGATCCCGACCCAGCACTTGCAGCAGCCCCAGTTCCCGGTACCTGGTTCCTTTTCCCCCCGGTCCCAGCACAATTCCCGGTCCAAGCCACAACACCAGCACCAACTCTGGGCACAGCCCCCACCAACCATAACTGCCAATTCAGCAATTGCCAGCCCAGCCCCCACCACGTCCTCCCCCAACAAAAAGACACAGACACATTGTAGCCAACTTTAGCCTGTTAGCtagggtgcttgactgccgttgtgaggtcagaacgctcggatcaaccctactcctcggccagagatctctgaacgctccgagagcaaAATGCTCAGAATTTACGAATGCCAAGAGCACACtttggcactccagattgaattaaCAAACACACCCAATTATTGATTTATTTAAATACTCCATATTTAGGCAAATTTAGTATGACAtctgggaacttttggcatactaactatatccatactatgaccgaTAAGCATTCTACATACTCAAATTACATCTCAAATAGTATGGTTAGAATGAGAATTCGAACACAGCTAATGTCTTTCGGGACTGCCTGTCGGGCACTACTTTCCCGCATTTTTGTTAACAACGGTGAGGGCAGGCGGGATCGAAGGACACTGGAATCCGGTACACATCAGGCGGGAGGCGGGATACGTAGCTAGCTAGGACATCAGTAGACAGTGTTCTGACATAGAAATTATATAAGTTAAGGACAAAAAGTTAAAACAACCACTCAATGTATTGTGACATCTGTGAAACTGAGAACAGGAAGGGGGGTCTCCTCACCCACAGAGGGAAAGAGCCATTAGGCTTGTTGTAGATTAGGAAACATGTTGAAGAATATGATAAGCAATGACCAGTTAGAGAAGACTTGTACAAAAGCATTCATTTATTGAGTGAACGCCAAATAATAGAAAGGGACAtttaacatgtgtgtgtgtgtattcaaagTAGATTAGAGAAATATTAACAATTCTAGGATGGAACATGTCTGTAAGGATTTGATCTTATAGACTAGACTGTGTCCCGAGAAGAGAAGTAAGTCAGGCACTGAGTAACCGCAGAGGTTTCCTGTTTAGAGCTCGACCTGTCAGTTGCAGACATATAGAGGAACCCAGTTTAACCGAAGGAGCTATCGAAGTTGAACATTGTGACAGAGTTAGATGAGAGGAGGGGCATTTATAAAGTGTATGTTATGACCAAATGTGAGGTAGAAAAGGCCATgtgcattgtatgatttttagagctctcgtgaataaacattttgactattTTAAGCTGGgactctgtctgtttcattcaaccaGAATCTTACAAACTCTGGGTTGCTGAGTAGTTTAATTGAAGTTCAGTTTAAGAACATTGAGAACAAAATTCTCGTAACATCTTCGCGCGGGTGCCTGTCGGGCACTGCTTTCCCACACTTGTGTTAATGCAGAGGGCAGGTGTTCGGCAGGCGGAAGTGAAGgacactgtgtgctagctagctagcatggagGTCTCCAGTACACAGCAGGCGGGAGCGACATCGGTAGtgtcatatatacatatattcatacacatagctcatatattatACAGCGCCAAACTTATCCGCTTGACTCCAGTCATTGCACGCACCCCTGTccaaacaggaagcaccctaCCCCCAGCCATAAACTGCCAGTTTCAGTTCCCCTTATCTCACGactcctggacacacacacactccacccccctctactggtcgggtgccaagagcagaggactctgctgtgcaccattggggctcctgctctggctggagcaggcccgcctccaactcttcgggaccagtcagaagaccaccacgacaagactccacctacattattctatgtataaaaactgTTGTAACCTTTGTTTAGGTCCCTTTTTCAGCTAACTCCATTTTGAACTATATGAATCAGGTCCGTGCACGTTAAACTGCTaggacaagatatctttgacCTTAATAAACTGCCTTTTTGCTATACTTgattccactctgtccagcgtccatgatttggtctcacTCTCCTGTAAGTTAATCATCAACAAAACttggtagcagaggatggtttaaACATCTGAATTCTATCTAGGACAAGTGGATGTGAGAGGAGACAAATCATTGGGTGCAAACCAAACGGAAGGGTGACCTCTCGCTAGGAGTATTCGGCTATTCAACTTGCCTCAGGAAACTGATCAGAGCGCACGACATAAAAGGTAAGCAGAGCCTGTTAAATCAAAAATCTGCATATTATATTTTAGTCAATTGCCAAATTTTGATCAGTAGTACTGAGCGTGAGTATGAATTGCTGTTAAATTGCTTTTAAGAAATCAAGGCATGGTTAAACAGATAATTAACTGAATCTGCATGTAAAAGATCCTATTAAATAAGTGGTATATTGTTTAATTGGTTGTGTTAGAGGTGTAGTTAATTAATAGATCGACTGAATCTGCATGTAAAAGATCCTATTACATAAGTTgtaaactgtttaattggttatGTTAGAGGTGTAGTCGAATAGATATAGTACATGTAAATTTAATTAATAGATCGACTGAATCTGCATGTAAAAGATCCTATTAAATAAGTTgtaaactgtttaattggttatGTTAGAGGTGTAGTCGAATAGATATAGTACATGTAAATTTGGCGTTCCACAAGACAGAGATCGAGAATGATGTGACCATTGCACATCAAACTATATTTAATATAACCAGATTTGACGTTCCGCGAATTTGTTGTGCCCAATTCAGACAAAACAGTTGTTGGGGAATGATTGCCATACTGTGAATAGATAAACGGTGTAATATTGACGGACACTGAGCTGAATACTGTTCTTACCAGTCGCCGAGCTGTGAATTAACCCAGCCGCCGTGCTAAAATATTGACTGTTTCTTTTTTCCCTCTTTCCGCTGTTGGTATTCCTACAGAGatagaattattctgacaattgttaTAGAATCGCCTAAATTCACTGATACATCGTTCCAAAAGGAAATCACCGAATCATTTCTAGAAAATACCTAAATaaatcgctgaacaaattcaaataaaataccggaGAAACACACACGTGGTTGGGCGTcacatactgataaccccctttgtatgcgagggtgggggtggaagagATAAGCCTGAGCCAGCACCGCAGTACATCCCTGGTCTCGACCAGGGACGggctaagcatacaacgatagaaataaacaccacatagtaaggattgaatatacctaaataacgcattatacacattatcagacgaactagataaaatgtctgcagccacCACCCCAATACCCTCCCCCACAGCAGTATATCCTGCAACAGCAACAGTCACAATGGGCTCAACGGGGCACCTATACCGGTCCACCCAGAGGGGTGTGCTACAACTGTGGAACTCCTGGCCATTATTCACGGGATTGTCAACAGCCACTCTCCACTCAGCAACACCTATGGAGAGGTAGGGGACGTGGAAGAGGAAGTGGGGGACACCCACCCCTGCAACACCCTCAACCAGGACCCAGTCACCTGCAGCAGTCAGCACCTGCATACAACCACCCCGGACCTACTCACATGCAACAGCAGCAGGGAGGATACAACCAACCGCAGTTCCAGGGAATGGCTGGGGACACCATGCCCTGGCCATGAAGATGCCCACCACCTGCGGCAGGAGGGAGAGCCAACATTTTCAACTACACACTGAACCAACTATGATATGTGAAGTTGAGGGTGTTCCCCATCAGTTCCTGGTAGACACAGGATGCACCTATTCTACTATCAAGTTCCCTCAAATGCTGTCATCTAATTCCATATCGGTGGTAGGGGTCACGGGATCACCTGAGGCTCAAAGCCGCACTATCCCTTTAACATTCTCCTGGGAGAAATGTCAGTTGAAACACCAGTTCCTGTACTGTCCAAAATGCCCGATCAACCTACTAGGACGGGACCTCTTATGCAAAATGGGGTGCACCATATATCTTACTGAAAGTGGAGTGGAAGTATCCACCAACCCTCCCTCTTCAACACCTGATCGCCCAGTAAGAATTATGATGATGCCACTCCTGCCGACGCCCACGCTGTCTGAAACCCAAGAAGTCCACTggctaaaatgcctacccacagggcctgccacccctcacatccagcttaagttcaaccaactgaaagctcaaatctacactctgcacccgtataagactccccaagctgagaCACTGATGACTGCCCCTACACTGaagactgggacgaagacatgatgcacctgaccccacctatcaggtgttgtaccattgtgtgtggcccagagggggtggcagcaccgaTCATCCTACGACCAAGGGacctccatgcacccctggcctggacggctgaagcCTCAACAGCCTTTGCACTCCTGAAaacagatctatcagcggcagcagcGCTGATTGCACCTGACTACAACATtaagttccatttggatgtttctgaaaAGGAAGGATTCACCTCGtccgtcctattccagaaacaagagggggagagaaaggtatTGATGTACCACTCCTCAaaacttgaccacattgaggtaggacagacaacatgttccagatacgttgctgcagtagcaaaagctattgaaaaaaaacagctcacctcgtgatgtGTCATCCATTGGAGATCCACACCCACCATGGCGTCGCTGCGTATCTGATGAGTAAAGAATAAACGTTCAGTGCTGAAAGAAAAACCAAGATCCAGAACTAATGCACACAGTCACATATCACGTTTGTGAACACCGACAAAAACATGGCAGATGCACTCAACGCAGAAGAAGGACTGCCCCACTCTTGTGCTGAAAGAGCGGCACAAGAACTAAAACTGAGACCAGACCTGAAGAATGAACCACTGACTAATCCCGACCAATGGCTGTACACTGATGGCTGCTGCTACAAAGGAGAAGAAGGAAACATAGCAGCCTATGCGGTGGTACAGCAACTCCCAGACGGCTCATATGTCACCCTTGAATCAGCCATCATCCTTCAACCAGCATCTGCccaattagctgaaatcatcggattgacgcaggcCCTCATCAGAGCAAAAGGAAAGACTGTGAACATGTACACAGACTCAGCGTATGCCCATGGAGCAGTCCACACGGATGGACCACAGTGGGTAAGAAGGAACTTCACTACAACAGGAAACCTCCCCatcaaacacaagacacagatggAGAAACTAATAGCATCGGTATCACTACCGGCGAAGGTAGCCATCATGAagtgtaaaggacaccagcaatTGAAAACCAGGATCAGTGCGGGAAATGATGCAGCCGATAAAGCAGCCAAGAAGGCTGGAGGTTACGCTCCCAAACAGATGATACTGCGACCACAGCTATCACAAACAGAGCATACCCAGCAAGACATAGTGGTGCTACAACACTCAGCAGGACCATATGAACACTCAGTCTGGGCACAGAAAGGGGCGACCAAAGGACCAGATGAACTATGGAGATGCCACGACGGCAGACTGGTAGCCCCAGCAAACCTTTGTCCAGAACTTTTACGAGAAGCACATGGCCCtacacacgaaggcaaactaaagaccctccaaaaggtctcgcacatctggtggcaccctcacatgaaagaaatgactgacttattttGTGAAGAATGCAACATATGTGGCAGccacaacccaaagaaaccatatcaaaaaccaatgggctcatacccagtacctaatgcatgttttcaggacattagtatagactacaccgacatgggccccgacAATGTATCTAAAGGCAAACGCTATCTCCTAGTTATggtagataggttctccaaatgggtagaaGCAATACCAACAGCAAAGGGGGATGCTAGGTCAGTCGttaagtggctacaaaccaaactaatacccaggtatggcatcccaagacaaatcaaatttgacaaatggctcaCATTTCAGTAACAAACACCTAtgacaggtggaagaaagatttggcataacacacagatttggatctgtgtacaggccccaatcTCAAGgtctggtggaacgtcaaaccaaaagttgaaagctaagatagctaaagtgTGTGCAGGTTCAAAGTTGACATGGGTTGAAGCCCTGCCTCTGGCGTTGATGGCCATGAGAGCCTCACCAGGAGCAGGCACCCATCTCTTTCCTCATGAGATAATGACTGGAAGAGTCATGCctggtccaccaagggagggaggtcatatgcccgcccttgatgtacaacaaattgtaatgtctgattatgtgaaaaaactgacggttctctctgcagcactctctacccaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1681188 lncRNA upstream 8975 59249205 ~ 59249504 (+) True G1469851
TU1681187 lncRNA upstream 9930 59248265 ~ 59248549 (+) True G1469850
TU1681186 lncRNA upstream 10868 59247141 ~ 59247611 (+) True G1469849
TU1681089 lncRNA upstream 140944 59117285 ~ 59117535 (+) True G1469761
TU1681077 lncRNA upstream 145720 59112540 ~ 59112759 (+) True G1469749
TU1681211 lncRNA downstream 138682 59405174 ~ 59405793 (+) True G1469871
TU1681336 lncRNA downstream 184270 59450762 ~ 59451182 (+) True G1469990
TU1681643 lncRNA downstream 229335 59495827 ~ 59496126 (+) True G1470277
TU1681656 lncRNA downstream 239542 59506034 ~ 59506337 (+) True G1470290
TU1681667 lncRNA downstream 346364 59612856 ~ 59613886 (+) True LOC118940527
XM_021567415.2 mRNA upstream 13373 59210677 ~ 59245106 (+) False LOC100136832
XM_021567416.2 mRNA upstream 13373 59210677 ~ 59245106 (+) False LOC100136832
XM_021567417.2 mRNA upstream 13373 59210677 ~ 59245106 (+) False LOC100136832
XM_021567419.2 mRNA upstream 13373 59210677 ~ 59245106 (+) False LOC100136832
XM_021567420.2 mRNA upstream 13373 59210677 ~ 59245106 (+) False LOC100136832
XM_036950330.1 mRNA downstream 16307 59282799 ~ 59438025 (+) False LOC110494246
XM_036950331.1 mRNA downstream 16307 59282799 ~ 59438025 (+) False LOC110494246
XM_036950332.1 mRNA downstream 16307 59282799 ~ 59438025 (+) False LOC110494246
XM_036950333.1 mRNA downstream 16307 59282799 ~ 59438025 (+) True LOC110494246
XM_021569175.2 mRNA downstream 194822 59461314 ~ 59465333 (+) True LOC110494249
TU1680364 other upstream 750594 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 1644179 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 1710301 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 1774890 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 2108136 57149303 ~ 57150343 (+) True G1467031
TU1682011 other downstream 835400 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 1705986 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 2289827 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 3432011 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 3443847 62710339 ~ 62711136 (+) True G1473177

Expression Profile