RNA id: XM_021569349.2


Basic Information

Item Value
RNA id XM_021569349.2
length 3565
RNA type mRNA
GC content 0.53
exon number 15
gene id dstyk
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63740362 ~ 63779877 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACtcccattcactccttgaagATGTGCGCGCCTTGTCCCAGAATCGCCCAGAATGCACCGCGCGGGCGTTAATACCAATCGAATGGAGTTTACAATTTAATTTCTTAAAAGTATCTCTGGTTAGACATCAAATTATCAGGGTCTCGGTAGATAGCACCAGTTAAAAAAATGCCTGAGGGAGCTCACGTAATGACGTCGGTTGGGGTAATGTGGCAATTATTTTAAAACAGATTAGCATGGAATACGATGCCTGGTTTGCTGGCTAGGATAGGAAGGTAAATTAAGCTACGGAGCTAGCTAGCGTAGTTGACATTGGCCATCTCAATTCACTAACTTTGAGACCCTGCTAGCTAGTTAGGGCTAGAAACAGTGtacagctaatgttagctaagccAGTCGTTTGTTCAATTATTTTGGAGGACATTGGCTATCAAGATATCTTCCGTTCAAAACTCGAATTGCCATGGAGGGGATCGGTGGCGGAAATTTGCAGAAAGTGACTCCTTTAGCTCGAGAATTAACCCGGATCTTCAACGGCTACAATAAACACTCCATACAACTAAAAAATAATCTGAAAGAGACCAACGCATTTTTCCGGGAAATAAAACAGAACTACAGTAATGCCTGCGCGTCGGCCGCCAGCTCCGAGGCAGCTGCTCTGGAGGCAGGTCAGCTGAGCTACATCTTTTTCCCCCGGCATGAAGAGGAGTTCCTGCACAGCAGCGTGGGCAGCGCCCCCTACATCCTGGTTCTTGGCCAGGACTGTGCCGCACGCTACCAGCTGCTCAACTGCCTGCTGGGGGAGCGGCTCCTGCCCCTAGGTCCCGTGGCGGGTGAGGCCTGCAATGGCGTTCATGGCACGGCCTGCAAGAGGAGGAAGCTGTGCTTCACCCACGGGCGCCAGACGCGGCTCAGCCTGGCGCTGCCCGGCCAGTATGAGCTGGTTCACCAGCTGGCGGCCCACTGTGGGCGCTGGGATACGGTGCCCAGGGAGGATCTGGAGATCCAGGAGGAATGTGAGGACCCCGCCCACAGACTGGCCGAGCTGGAGATCACCCTGCACCACCCTCTGCTACAGGAGGCGAAAATCATGGTGGTGCCGTGCCCCAGTGTCCAGCCCATCGAGGCGGCCCTGGAGGACTGCACGCGTAACGTGGTTCCCATCATACTCTATGTGCTCAACCAGGACACCCTCACTGCCGAGCAGGTGGCCGAGCTGAGGAAAGTCAAAGATACGCTCCCCTTCCCCATCTTCTTCATCCGTATCCCAGCCGAGGCCTCCCCCGAGCCCAGCCGGCgcctggagagggagaagagccCCCTTTACAAGCAACTGCTGTCCCTAGGCTTTCTCAGCACCCCAGTAGGGAACTGTTCCTGCGGAGCCCCCTCCCAGACGCCCAGCCTGGCCACCAAGCCCCAGAGCGTACTGGGGGAGGCCTTTGAGAGGCTACACCGCCTCCTGGTGCCCTTCACCCGTCAGGTGCTCCACTTCCAGCATGTGGAGGCGGCTAACCTGCTCAACGGGGTGCACTGCCGCTGCCTCGACCTCTTCATCAACCAGGCCTTTGACATGCAGAGGGACCTGCAGATCACGCCGCGGCGGCTGGAGTACACGCGGGAGAAGGAGGGCGAGTTGTTCACCTCCCTGATGGCCATTGCCAACCGCAAGCAGGAGGAGatgaaggagatgatcgtggagaCGCTGAGCAGCATGAAGGAACAGCTGCTGGAGGATGCTGCCAACCTGGAGTTCACAGACCTCATAGTGGCGACCAATGGAGAGCCTGTTACTTCAAAGGTTATAAAATCCTGCATCCACCAgatccaagagctgatagttgtGAGGTTAAACCAAGCGGTGGCCAACAAGCTGATCAGCTCTGTGGACTAcctgagggagagctttgtaggAACCCTTGAGCGCTGTCTAAACAGCCTGGAGAAGTCCAACATGGAGTCCTCCGTCCACAACGTCACCTCCAACCACctcaaacagATCCTTAACGCTGCCTATCACGTGGAGGTGACCTTCCATTCAGGATCCTCTGTTACGAGACTTGTCTGGGAGCAGATCAAACAAATCATCCAGAGGATAACGTTTGTGAACCCTCCTGCCATCACACCAGAGTGGAAGAGAAATGTGGCCCAGGATGCCATAGAGAGCCTGAGTGCTGCCAAGCTGGCGAAGAGTATCTGCTCCCAGTTCAGAACACGCCTCAACAGCTCCCACGATGCTTTTGCTGCCTCCCTGCGACAGCTGGAGGAAGGTCACACGGGGCGGTTGGAGCGTACTGAGGACCTGTGGCTGCGTGTGAGGAAAGACCACGCCCCACGGCTGGCCCGCCTGTCTCTGGAGAGCCGCTCCCTCCGAGACGTGCTGTTGCAtgGCAAGCCCAAGCTTGGCCGAGAGCTGGGGCGGGGTCAGTATGGAGTGGTCTATCTGTGTGACAGCTGGGGGGGACGCTACCCCTGCGCTCTGAAGTCTGTGGTACCGCCCGACGACAAGCACTGGAACGATCTGGCTCTAGAGTTTCACTACACCAGGTCCCTCCCTAAACATGAGCGTCTGGTGGATCTCCACGGCTCGGTGATTGACCACACTTACGGTGGGGGCTCCAGCATTGCTGTGCTGCTCATAATGGAGAGGCTTCACAGAGACCTCTACACAGGCTTGAAGgctggTTTATCACTAAAGGAGAGACTCCGGATCGCTCTGGACGTGGTGGAAGGCATTCGTTTCCTGCATGGTCAGGGGCTTCTACACCGAGACATTAAACTAAAGAACGTTCTATTGGACAAGCAGAACCGGGCCAAGATCACAGACCTGGGCTTCTGTAAGCCAGAGGCCATGATGTCTGGCAGCATCGTAGGAACCCCCATCCACATGGCCCCAGAGCTCTTTACAGGAAAGTATGATAATTCTGTGGACGTCTATGCCTTTGGAATCCTGTTCTGGTATCTCTGCACTGGCTCTGTCAAACTCCCAGAGTCCTTTGAGAAATGCTCCAGCAAGGACCAGTTGTGGAATAACGTTAAAAAAGGCGCGAGGCCCGAGCGTTTGGCCAGCTTTGATGAGGAATGCTGGCAGCTGATGGAGGCCTGCTGGAATGGAGACCCTTCCCAGAGGCCCCTGCTCGGCATCGTAGAGCCCAGCCTGCAAAGCATCATGATACGGCTTTGTAAATGTGGCTCGCATCAGAAAAGCAGCAGCCTGGAGGACTCAAACTGACACAAGCGGACCAGACTGTTGCAAAGGATTATGGTCAAAAGAAAAGTAATTTGTTGTatttatggagaaaaaaaaagatatGACCAAGACAGTTTCCTCTTCCTTTTAAAGGAGTTAAATATACACTATTTAAGATGAACTGAAACTGGACAAACATGTTTGTGTCGTGTGTATTTGTATAGTACAAACTGTCTAGTGTACACTGCTTTCGTCCATGCTAATTGTTACTAGATATGAAatgttaaaaaaatgtataattttagATTGTATTAATTGAATTCCTGCATCTATGCAATTCCAACTTTTTTTTAATAAATGATTTTGACAAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1686705 lncRNA upstream 3883 63735944 ~ 63736480 (+) True G1474855
TU1686702 lncRNA upstream 7260 63732885 ~ 63733103 (+) True G1474852
TU1686699 lncRNA upstream 10450 63729680 ~ 63729913 (+) True G1474849
TU1686696 lncRNA upstream 14524 63725621 ~ 63725839 (+) True G1474846
TU1686685 lncRNA upstream 30403 63709696 ~ 63709960 (+) True G1474835
TU1686710 lncRNA downstream 712 63780589 ~ 63782929 (+) True G1474858
TU1686758 lncRNA downstream 98383 63878260 ~ 63883527 (+) True LOC110494364
TU1686816 lncRNA downstream 131968 63911845 ~ 63919069 (+) True LOC110494366
TU1686838 lncRNA downstream 164242 63944119 ~ 63951085 (+) True G1474977
TU1686857 lncRNA downstream 186483 63966360 ~ 63966573 (+) True G1474995
XM_021569338.2 mRNA upstream 34763 63702078 ~ 63705600 (+) True bysl
XM_021569335.2 mRNA upstream 49330 63684292 ~ 63691033 (+) False tmcc2
XM_021569334.2 mRNA upstream 49331 63684043 ~ 63691032 (+) False tmcc2
XM_021569332.2 mRNA upstream 68929 63668521 ~ 63671434 (+) False cdkn1a
XM_021569352.2 mRNA downstream 98362 63878239 ~ 63883527 (+) False LOC110494364
XM_021569354.2 mRNA downstream 113121 63892998 ~ 63903875 (+) False nbl1
XM_021569353.2 mRNA downstream 114204 63894081 ~ 63903875 (+) True nbl1
XM_036950425.1 mRNA downstream 129163 63909040 ~ 63919556 (+) False LOC110494366
XM_021569356.2 mRNA downstream 129165 63909042 ~ 63919556 (+) False LOC110494366
TU1686672 other upstream 52273 63684090 ~ 63688090 (+) True tmcc2
TU1686655 other upstream 77109 63658444 ~ 63663254 (+) True srsf3b
TU1685904 other upstream 522769 63216948 ~ 63217594 (+) True G1474159
TU1684816 other upstream 1029227 62710339 ~ 62711136 (+) True G1473177
TU1684810 other upstream 1041548 62698503 ~ 62698815 (+) True G1473171
TU1687795 other downstream 783497 64563374 ~ 64565146 (+) True G1475820
TU1687820 other downstream 828377 64608254 ~ 64622169 (+) True LOC110494386
TU1688055 other downstream 975444 64755321 ~ 64774706 (+) False LOC110494389
TU1688070 other downstream 975444 64755321 ~ 64780475 (+) False LOC110494389
TU1688642 other downstream 1523540 65303417 ~ 65304128 (+) True G1476510

Expression Profile