RNA id: TU1629042


Basic Information

Item Value
RNA id TU1629042
length 440
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G1423068
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 15493849 ~ 15494288 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCagacaataaaaataaatagtcGTCCCAAAATGAAGCCCTACATCTCTCCCAAACACGAATACCGTTACAGAAAGGTTGGTTTGTTCAGCTCGTATTTGTTCATCATCATCCAATATGTATCGACCTGTATTTGTATGATATAGATTCAAGAAAACCCTGAGCCAGTGTTTCTCCAACACCACCACATGCACTACTATAAAGTGGagagcactacttttggccaatagtgcactatatagggaacgggGGCTTCATTTGAGCTAACAGACAGTATCAGTAAACCCAATGGCCTTGAGACACCATAAGAGCTGTGGGGTATTCCAGAAAGCAGGGTTAATACAtcagccagctaactttgattAACAGCCTTTGCCTCATATCTCCGGATTTCCTGGTTGATTAAAATTATCTACATTTGTATAATAgttgtttctgtt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1629030 lncRNA downstream 10372 15483142 ~ 15483477 (-) True G1423060
TU1629022 lncRNA downstream 21808 15471825 ~ 15472041 (-) True G1423053
TU1629000 lncRNA downstream 67547 15377339 ~ 15426302 (-) True G1423032
TU1629006 lncRNA downstream 95261 15398168 ~ 15398588 (-) True G1423038
TU1628993 lncRNA downstream 137414 15354532 ~ 15356435 (-) True G1423025
TU1629041 lncRNA upstream 772 15495060 ~ 15495865 (-) True G1423067
TU1629043 lncRNA upstream 3393 15497681 ~ 15497991 (-) True G1423069
TU1629044 lncRNA upstream 6844 15501132 ~ 15502500 (-) True G1423070
TU1629045 lncRNA upstream 8636 15502924 ~ 15503151 (-) True G1423071
TU1629050 lncRNA upstream 15275 15509563 ~ 15509806 (-) True G1423075
XM_036948329.1 mRNA downstream 25593 15444480 ~ 15468256 (-) True LOC118936458
XM_036948328.1 mRNA downstream 55444 15288411 ~ 15438405 (-) False LOC118940092
XR_005036852.1 mRNA upstream 120576 15614864 ~ 15625537 (-) False LOC118940331
XR_005036851.1 mRNA upstream 120576 15614864 ~ 15625543 (-) False LOC118940331
XM_036948330.1 mRNA upstream 133260 15627548 ~ 15704265 (-) False LOC110485613
XM_036949091.1 mRNA upstream 249927 15744215 ~ 15760194 (-) True LOC110487262
XM_036949087.1 mRNA upstream 283399 15777687 ~ 15797879 (-) True LOC110485609
TU1628867 other downstream 80252 15397290 ~ 15413597 (-) True G1422920
TU1628865 other downstream 88675 15383119 ~ 15405174 (-) True G1422918
TU1628810 other downstream 140759 14926365 ~ 15353090 (-) False G1422891
TU1629094 other upstream 89407 15583695 ~ 15584093 (-) True G1423112
TU1629986 other upstream 314398 15808686 ~ 15831010 (-) True G1423836
TU1630061 other upstream 490985 15985273 ~ 15986842 (-) True G1423891
TU1630241 other upstream 875469 16369757 ~ 16370443 (-) True G1424040
TU1630255 other upstream 912443 16406731 ~ 16410128 (-) False G1424051

Expression Profile