RNA id: TU1668170


Basic Information

Item Value
RNA id TU1668170
length 228
lncRNA type inter_gene
GC content 0.68
exon number 1
gene id G1458115
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48821297 ~ 48821524 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcccagtccggggcccgctacgagggtccccagtccagggCCCGCTACGAGGGTCCCTAGTCCAGGGCCCGGTACAAGGGTCCCTAGTCCGGTGTCGGAAacgagggtccccgcaccagaggtgccaccaaagtggggtgagccagtggtggagcggggtctgcgtcccgcaccTGAGCCGCCACCACGGATGGATGCCCACTCAGACattcccctataggttcaggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1668085 lncRNA upstream 6627 48805912 ~ 48814670 (+) True bsnb
TU1668148 lncRNA upstream 45613 48775465 ~ 48775684 (+) True G1458093
TU1668088 lncRNA upstream 48023 48773057 ~ 48773274 (+) True G1458033
TU1668138 lncRNA upstream 57472 48763626 ~ 48763825 (+) True G1458083
TU1668127 lncRNA upstream 71533 48749544 ~ 48749764 (+) True G1458072
TU1668176 lncRNA downstream 7752 48829276 ~ 48829484 (+) True G1458121
TU1668178 lncRNA downstream 8797 48830321 ~ 48830908 (+) True G1458123
TU1668179 lncRNA downstream 11274 48832798 ~ 48833281 (+) True G1458124
TU1668202 lncRNA downstream 25873 48847397 ~ 48847712 (+) True G1458139
TU1668203 lncRNA downstream 26504 48848028 ~ 48848235 (+) True G1458140
XM_036950013.1 mRNA upstream 8074 48693324 ~ 48813223 (+) False bsnb
XM_021568695.2 mRNA upstream 131200 48677007 ~ 48690097 (+) True bap1
XM_021568689.2 mRNA upstream 186744 48632152 ~ 48634553 (+) False LOC110494023
XM_021568690.2 mRNA upstream 186744 48632171 ~ 48634553 (+) True LOC110494023
XM_036950006.1 mRNA upstream 237630 48579329 ~ 48583667 (+) False LOC110494018
XM_036950016.1 mRNA downstream 45065 48866589 ~ 48938021 (+) False erc2
XM_036950018.1 mRNA downstream 45065 48866589 ~ 48938021 (+) False erc2
XM_036950014.1 mRNA downstream 45066 48866590 ~ 48938021 (+) False erc2
XM_036950015.1 mRNA downstream 45066 48866590 ~ 48938021 (+) False erc2
XM_036950017.1 mRNA downstream 45067 48866591 ~ 48938021 (+) False erc2
TU1668086 other upstream 100053 48693321 ~ 48721244 (+) False bsnb
TU1667106 other upstream 396892 48389082 ~ 48424405 (+) False LOC110494013
TU1666965 other upstream 784714 48030914 ~ 48036583 (+) True glrx
TU1666865 other upstream 981927 47833580 ~ 47839370 (+) True G1456969
TU1666845 other upstream 1013816 47805358 ~ 47807481 (+) True LOC100135862
TU1668190 other downstream 101283 48922807 ~ 48928262 (+) False erc2
TU1668185 other downstream 106823 48928347 ~ 48938022 (+) False erc2
TU1668186 other downstream 106823 48928347 ~ 48938022 (+) False erc2
TU1668187 other downstream 106823 48928347 ~ 48935337 (+) False erc2
TU1668189 other downstream 111816 48933340 ~ 49040356 (+) True erc2

Expression Profile