RNA id: TU1668190


Basic Information

Item Value
RNA id TU1668190
length 4462
RNA type TUCP
GC content 0.47
exon number 4
gene id erc2
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48866589 ~ 49040356 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCATGTCTTCAACCTGTTTCTCCACCCGTGTCTGTCTGCACACCCTTTATGATTCAGTAACTAAGGTGAGAatgggaaattgaaaaaaagaaaCGTTATACAGTGCCTCCTATaaattattcataccccttgacttattccaaattGTGTTGGGTTACAGCTGGATTGtgaaacatttgcccattattcttttcaaaattcttcaagctctgtcgaattagttgttgatcattgctagacagccatttttaggtcttgccatagattttcttttagcagatttaagtaaaaaatgtaactcggtcactcaggaacattcaatatcttcttggtaagcaactccagtgtagatgtggccttgtgttttagttattgtcctgctgaaaggtgaattcctctcccagtatCTGTTGGGAAGcggactgaaccaggttttcctctaagattttgcctgtgcttagctccattccgtttctttttttatcctgaaacacttcccagtccttaacacttacaagcatacccataacatgatgaagccaccactatgcttggaaatatggagagtggtgctctgtaatgtattggatttcccccaaacataaTACTCAGGACAAAAAGTGTATTGTTTTGCCACAGTTGTTGCATTATTACTTTAGAGCATTGttgcaaataggatgcatgtttgggaatatttgtattttgtacAGGATTCTTTCTTGCCGTCCCCATTCCTCTCCAGCAATTGAGTTAGgaaagacgcctgtatctttgtagtgactgggtgtattgatacaccatccaaagtgtatcttcaccatgctcaaagggaaatTCAATGTTTACTTTTTTTCATATTGAATGCTCAAATATAAACAATTAGCTGGCGCACACTCAGAGAAAATGATTttatgtagaggtgctgactaacggcgaataaactATAAGCTATAAAAAAATAGAGTCGCACActctatatataaactcccagtaatttattgagTAAATCACCAATGtgttcggcatcactgtgccttcttcaagACATTGgataacctccctggtctttgtggttgaatttgtgtttgaaatgaaatgttcgactgagggaccttacagataattgtatgtaagGGGTCCACAGATGAggttgtcattcaaaaatcatgttcaacactattattgcacacaaagtgagtccatgcaacttattgtgacCTATTGagcacatttgtactcctgaacttatttaggcttgccataacaacggggttaattaatttgtaaaaatgttgaaaagcataattccactttgacatgatgttGTGTTTTGGCCAATGACAAGAAAACGCCATTTaacccattttaaattcaggctgtaacacaacacaatttgAAAAAGtagaggggtgtgaatactgacGGCATTGTGTATGACTAAACTAACTATATCACAAACGAATCAATCATCTGTAGTTGATGTATGAATGAccagaaacatacagtatattgtactaATAATGAACTTGTCCATATGTTCAAAAACACATTTAACAAATACAATTGTACATATACAAGCCATAATGatatcatatactgtatatgtcttATATATGTCAGTTTTGGCATATACAACATATGTATTCCTTTTCAATTATACATGCCCTGTTCACATCCTTTAACATGAGTTCTCTCATTACAACAGAATACCATTATAGGATCTGTACTGTAGAAAATGCACATATTGTACAtgtaccttacacacacacacacacaccattttatgtgttattttgtgtgttGGCTGTTTGGTGTAGCTTGTGTACAGCAGGAAGGTCTTTGGAGTTGTGTCCTTCTCCTGCCATGAGCACGCTGCTTCCCCTGCTCATTCCAACTCCCCATCTGCCCGCTTGCCCCCTCATCCTCCCCCACAACCAGTCTCACAATTTATACTTCAATACCTCCACCCTACTACTCACAGTGAAACCCATCCTCTCTAAACTGacttctcccctgctctcccttgGTCTCCCTGCCCActcccctgccctgccctgcccggCCCTGCCCTGCCCTCTCCCCTGCCCTGCCCACTCCCCTGCCCGGTCCTGCCCTGCCCTCTCCCCTGCCCGGTCCTGCCCTGCCCTCTCCCCTGCCCACTCCCCTGCCCAGCTTGCTGTGCCAGATGTAAAGGCTAGCTCTCAGCCTAGTAGCCTGGCCTGCATGACTAGCGCTGCAGTGCTCCAGGTCAACTGTGCCCTGCTCAATGAGTGAGCTGCTTTAGTAGGTAGGGTCTGTATGTCCTCTATTGAACCCACACAGAGCCTGGTTTGTTTTGGTCCAGAGGGGTGTCAGTCAGTTGTTtggacccctctgtctgtctggctgccaTGGCTCCCTTGACTGGTTCCCTTGCTGCCTTGCCCACTTGGGCTCCTCTCCGCCTTGCTGTCTAGCTATACCAGCTCTcttgtccccctccctccttctagcCTACCCCcgctcgctccccctctctctagcccGGCTGGTGTCCTGACTGCATGCCCGGCCCACACTCACAGGCTGTGCAGCCAACAACTAATACACAGGCAGGGTTCTAACCTGGCTGTCAGAGGAGAAGATGTATCCTGTGCATCCTTCATTAGCTTTGTCTGTCAGGCTGCTGTGTCCTTCAGTGACTGACTCTCATTGGTGCTTCTGATGATGATgatctcccctgtctgtctctgaataGACTCTGTTGTCGGGTCCTCTGTTGTCATTCTTCTTTTCTGTTATGATTCTAACgtttctatgtttttttttactcttctcctcctcttttcctcctgtCTCCTGTGTGCGCTGCTGCTTCCTCTTGTCGtaccatccctccttcctcctcttcctcctcctcttcttcctctcctccacctgcaGCCTAGCACCCAGGTAAGTAGCGAACCCCTTTTGGCATGCCCCCCCCACCAACACCCTACACCTCCATTCCTCCACCTGAGAGGTGCAACTACCCCCCTCCAATCTAACTCTTGCTGCCTAAACCTGTGAGTCATTTCTGAACATATTAACATGGACTTGTCTATGTCTCATCTGTGTCTCATTTTTGTCTCCTGTATAATTTTTCCTGTATGTCTCCAGAATGTTTTTCATTGATTTTTATATCAAAATGTCAGTGTAATTGACAGTACCTGTATGTCTAACCTGAGTTTCCTGTGGTATGTTGTGTCCATCTCTACGTGTTTCTAATGAGTCTCACAGTCACCTTGTATTTAACATTTATACGTGTGTTATGCTGTTGGAGTTCTGTATGTCTTGTTCAAGTGTTATACTGTATTTACAGACAACGTGCAGTAGACAAAGTATTAGTAATGCCTCAAAAGTTGTTTCCCCAACACAAAGGGAAATGATCAGGAACGATTGGTATCAGTTGTCCTGGTAGTGGTGCAGTATAAAGATGGGTAGTATGACTGTAGAGGGTTGAACTCTGACCTCCTCTGTGGTACTCCATCCAGGCAGGCCAAGGAGCAAGTTACTAAGAAGGGGGGTCCCAACCTCAAACTAGGCCCCCAAGGGGACAAGAAGCCTGGTCAGATAGTGGGGGATCCTCGAAAGGACAACACCATGGACTCAGGACAGCATGTAAAGCTGGAGGAGATGATGAACACCCTGGAGAGGACCAGACAGGAGCTGGACGCCACCAAGCAGCGCCTCTCGTCTACCCAGCAGTCCCTGCAGGAGAGAGACGGTCACCTGACAAACATGAGGCAGGAGCGCAGGAAACAGTTGGAGGAGATCCTGGAAATGAAgcaACAGGCCCTGTTGGCAGCTATCAGTGAGAAGGACGCTAACATTGCTCTGCTAGAGCTGTCTGCCTCTGGGAAGAAGAAGACCCAGGAAGAGGTTTTGGCTCTgaagagggagaaggacagactGATGCACCAACTCAAACAGCAGACACAGAGCAGGATGAAGCTGATTGCTGACAACTATGAAGACGACCACTACCAcccccatcctcctcaccacacCCAACCCCAGCAACCCCACCCGGGCCCCCAGGCTCAGCTCCCCCAGCCACAGTATCAGCACCCTCCTAACccccagcagcagcaacagcctCCATACCCCCATGCCCCACACTCCCAGCACCCCCAGCCCCCACCCCAACAACACCCGCACCCCCAGCAGCCTCAACAGCAGTACCCCCCTCATCCACAGCAGCATCCACAGGGGCATCCCCAACAGCCTCCGCCTCAGCACCAACAACACCAACCACGGCCCCAGCACCCGCAACAAGCACAGCACCCACACCCACAACAACAACACGCCCACCCAGGACAGCACCCCCATGGGCCTCCACCACAGCAGCAGCACCCCCACctacaacagcacctccaacagcACCCACAACAGCATCCACAGCAGCACCCCCACGGCCCCCCTCTGCAAGCTCCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1668203 lncRNA upstream 74572 48848028 ~ 48848235 (+) True G1458140
TU1668202 lncRNA upstream 75095 48847397 ~ 48847712 (+) True G1458139
TU1668179 lncRNA upstream 89526 48832798 ~ 48833281 (+) True G1458124
TU1668178 lncRNA upstream 91899 48830321 ~ 48830908 (+) True G1458123
TU1668176 lncRNA upstream 93323 48829276 ~ 48829484 (+) True G1458121
TU1668239 lncRNA downstream 17223 48945485 ~ 48950296 (+) True G1458176
TU1668196 lncRNA downstream 44943 48973205 ~ 49003577 (+) True G1458133
TU1668263 lncRNA downstream 49639 48977901 ~ 49011971 (+) True LOC110494028
TU1668312 lncRNA downstream 91125 49019387 ~ 49020680 (+) True G1458226
TU1668324 lncRNA downstream 139765 49068027 ~ 49083653 (+) True G1458237
XM_036950013.1 mRNA upstream 109584 48693324 ~ 48813223 (+) False bsnb
XM_021568695.2 mRNA upstream 232710 48677007 ~ 48690097 (+) True bap1
XM_021568689.2 mRNA upstream 288254 48632152 ~ 48634553 (+) False LOC110494023
XM_021568690.2 mRNA upstream 288254 48632171 ~ 48634553 (+) True LOC110494023
XM_036950006.1 mRNA upstream 339140 48579329 ~ 48583667 (+) False LOC110494018
XM_036948351.1 mRNA downstream 49374 48977636 ~ 48980567 (+) True LOC118940102
XM_021568700.2 mRNA downstream 81746 49010008 ~ 49028325 (+) False LOC110494028
XM_036950021.1 mRNA downstream 81746 49010008 ~ 49028325 (+) False LOC110494028
XM_036950022.1 mRNA downstream 81746 49010008 ~ 49120417 (+) False LOC110494028
XR_005036997.1 mRNA downstream 105700 49033962 ~ 49035924 (+) True LOC118940474
TU1668086 other upstream 201563 48693321 ~ 48721244 (+) False bsnb
TU1667106 other upstream 498402 48389082 ~ 48424405 (+) False LOC110494013
TU1666965 other upstream 886224 48030914 ~ 48036583 (+) True glrx
TU1666865 other upstream 1083437 47833580 ~ 47839370 (+) True G1456969
TU1666845 other upstream 1115326 47805358 ~ 47807481 (+) True LOC100135862
TU1668185 other downstream 85 48928347 ~ 48938022 (+) False erc2
TU1668186 other downstream 85 48928347 ~ 48938022 (+) False erc2
TU1668187 other downstream 85 48928347 ~ 48935337 (+) False erc2
TU1668189 other downstream 5078 48933340 ~ 49040356 (+) True erc2
TU1668956 other downstream 510744 49439006 ~ 49439329 (+) True G1458807

Expression Profile