RNA id: TU1669891


Basic Information

Item Value
RNA id TU1669891
length 259
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1459622
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50456201 ~ 50456459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttaggcataaccattacaaaggatcaaAAGTCTAGAGGCATACTAAATTTGAACCCTCTTATTAAAAATACGCAGAAgaagctaaatcaatggctacagagggacttatctttaaaaggtagagtcctaataaccaaggctgaaggtatctctagactaacatatggcactctatctttatatcttgacagtaaaataagcaaggagatagaccagatgcttttcaactttctgtggagaaaccgtacccattacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1669889 lncRNA upstream 1617 50454092 ~ 50454584 (+) True G1459620
TU1669888 lncRNA upstream 2426 50453483 ~ 50453775 (+) True G1459619
TU1669887 lncRNA upstream 2751 50452780 ~ 50453450 (+) True G1459618
TU1669853 lncRNA upstream 18634 50435819 ~ 50437567 (+) True atxn7l2a
TU1669850 lncRNA upstream 31415 50424385 ~ 50424786 (+) True G1459583
TU1669871 lncRNA downstream 6012 50462471 ~ 50462950 (+) True G1459602
TU1669865 lncRNA downstream 26598 50483057 ~ 50491195 (+) True ldlrad2
TU1669909 lncRNA downstream 39539 50495998 ~ 50496367 (+) True G1459640
TU1669861 lncRNA downstream 46507 50502966 ~ 50504128 (+) True G1459592
TU1669869 lncRNA downstream 47807 50504266 ~ 50504512 (+) True G1459600
XM_021570335.2 mRNA upstream 10553 50438670 ~ 50445648 (+) True LOC110494981
XM_036948187.1 mRNA upstream 18589 50427145 ~ 50437612 (+) False atxn7l2a
XM_021570323.2 mRNA downstream 32265 50488724 ~ 50500086 (+) False ldlrad2
XM_036948179.1 mRNA downstream 53960 50510419 ~ 50543166 (+) False LOC110494989
XM_036948180.1 mRNA downstream 53960 50510419 ~ 50543166 (+) False LOC110494989
XM_036948181.1 mRNA downstream 60928 50517387 ~ 50543166 (+) True LOC110494989
XM_021570336.2 mRNA downstream 201582 50658041 ~ 50664680 (+) True LOC110494982
TU1669855 other upstream 20495 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 272505 50181165 ~ 50183696 (+) True LOC110494957
TU1668956 other upstream 1016872 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 1415845 48933340 ~ 49040356 (+) True erc2
TU1668187 other upstream 1520864 48928347 ~ 48935337 (+) False erc2
TU1670065 other downstream 320070 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 438481 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 623673 51080132 ~ 51090889 (+) False G1460249
TU1674769 other downstream 3717555 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 3799922 54256381 ~ 54264616 (+) True LOC110494100

Expression Profile