RNA id: TCONS_00049297


Basic Information

Item Value
RNA id TCONS_00049297
length 4527
lncRNA type intronic
GC content 0.43
exon number 2
gene id XLOC_024349
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 160873 ~ 165980 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCACATCACATTAGCAAGCGGGCTATTACCTCATTTACATGAATCATGTGGTCAGGAGTGACCGCCCACTGCTGTCCTCCTCTGGCTGAATCCCCTGTGGAGAtgttgtgtgtgagagtgtgtgtgtgtgtcaggtgtgtgTCCTCCTCCTGTGTTCTGCTGTAGCAGTGAATAACTCTGATCATTAAGCGGAGGGGTATGGAGCtgctctaaacctgccggaactactttagctgtgccgttatctgacaataaccaaacacctgaggTCAGGGGTGTCAgactcgctcctggagggccgcagctctgcagtttagctcCAGCACACTCCCCTGCAGCTCTCACAGCAGCCTGCAGGACTCCATCAGTCTGATCAGGAGTGTTTAATCAGGGCCGGAGCTCAAccctgcagagctgcggccctccaggagcggaGCCTGACCCCTGAGCTCTGACCCGTGAGAGCTTTATTAATCTCCAGAACACAAGTGACCAGGTTTAAGATGAAATGCTGGAGCTCTCGGACCCTCCACAGACAGCAAAGGGTCTAAGATGCTCACTGTATTACAAGTATTTCAGGTGTCTACAGGTGTCAGTGAAGACTGCTTCATCAACTTTGAACTTTTACAAAACTACAGTTTCAGGTCGGTGGTCTGAATCATTATTAAATCTGCAAGACCTCCTGATTTCAGTAACAGAGCTTCACAATCTCGTCACTGTTTGGAAAATAATTCAATGTTTCTCCACTGGGGGGAGCAATACTATAGAGATACCACTAAACCAGGCAGGATCACTCGGATCGCCAGTTTTCAGCTGGTCTTGAATCAGTTTAATGGATTTGTCGAAATTTAATGAAGCATTTGcaaaattaatatgaataatatttgaTAACAGTATATTGTTGGCCTGTTCAGCAGCAGAACCAACAGTATTAGCCTtgaaaatgaatgagaaaattCACATTATGCAGACACTTAATATTTACTGATATTAGCTGATAAAGTAAGTTTGTATTTAACACATTACACTTTGAGTTGAGCATTTGCAGTGTGAAAAAGCTGAATTCAATGCATTGTTAGCCTGTTATTGCTGCATTTACAGTTTAGACCATCAGGTGTCGCCAGCGTGCGCTGATTCAAACACTTCAACTCAGTGAATCATTTAGTGAATCAAGTAGTTTTGAAGCTTTGTTTCTCTCATCAATAGACAATAGAGTCACAAATACTCCTAAAACACTGTCTGAGCAGTTTATGTGGGTCAACAGTACTACAGGAGGCTACAATAAAAGTTCTGTGtgcaaaactaaaaataaaggcTTTATTCAACAGATTAGCTGAACTTGCGCTGACTGttgctgttttattttgtgtACTAAAGTATTCTGTTTGGTGAAACTTTACTAATGTAATAGTTGACAAAGCTTCACTCATCATCATCGAGTTGATCAAGAGCGTAGATGTTAGCAGCGGTAACTGGACGCAGTACAGTCAACCTAAAGACTTTAGTACACACTATACAGTAATACGGGAAGCTGTTTTCAAAGGTAGCGTCCACAGGTTATCATTATATTATAGAGTGATGAAGAGGGCGTCTGAGCTTTAACACTGAATCACAGAGCATCTGCTGTATGTTCTGTTCAGCTCCGTCAGGTGTTCAGAGGTGTTGGAGAAGTGGACAGACCCTGCGGTTCTGCAGTGAACACACAATGAACATCAACATGCGGGATCTGAAGCACATACATGATGACAAACAGAAGATCTGCGGGATAAAGATGATGAAGCACAGGCCGTGTCTGACCGTCTGCAGCGTGAACACACACAAGCAGATTCATTCATCCAGCCGATTCACCAATCAGAGGAATCAGCGCTCACTCGACTGATTCAGCAGTGATTCATGAATCAAACACACTGAGAGAACTGCAAATTAAAGATGATGAGAGATGGACATGAGGCCAGCCGTCCCTCAGACTGACACGACTGCAGTCTAGCACAGCAGCAGTATATCTAGTGCACTACAGCTGATAGTGTTACACCAccctgatataaacacacacagacagcagctGTCCTCAGTTCCTCATGCTCTGGACACTTCAACCTGCCTGCAGATCAATGTGAAGAGCAATATAAAAGAGAAGTTAGGGAATCATTCAACACTCATTTACAGTTTGAGCAATCAGACAGGCTGCTTGCTGGATCTACTGGGCTTTCTCCTGGATCTATGATCTGTCTGGATGGCATCTGTCTGGATCTGCGTGCCTGCTTTCCTCTGTTCTACATCTACAGGTCATTATCCTCTGGATCTATGAGCAGGGTTTTCTGGATCTACTGGACTGGTTTTCTGGACCTACAGGCTGTTTGTTTCACCTGTATTCTGGATCTACGGGCTTCATTTTCTGGATTTACTGTATGTTCTGGTACTTGTTTTCAGTGACCCGAGGTCCATTATTCTGAATCTACAGGCTGTATTCTGCCTCATTTGCTGAATCTATGTGCTGGGTTTTCTGGATAAACTGACagattttttcctttttctggactttaagggtgctaagctgttttttttctggaTCTACAGGCCATTTCCCTCACCCATGGCTTCTACAGTCAGTTTTTTCTGGAGCTGCTGGTTATTTTCCCCCAGAAGCACCGGCCATGATGTTCTCTGGATCTacaagcagttttctttttatctGAACTGAACCTGTTTCTAGATGTACTTGACGGATGATATTTCTCAGTATTCTGCATCTATGGAACAGTATGTTGTGAACGTGTGGGCTGGGTTTTCTGGGTCTTACAGGCTGTTTTTTTCACAGATATTCTAGATCTACGGGCCTTTATTTTCTGGGTGCTGTTTCTTGATCTGGGGTCCACTGCTCTGGATCTACGAGCTGTTTTTCTGCATCATCTTCTGAATATATGCACTGGGTTTTTCTAGATGTACAGGCAGATTTTCTTTTACTGGACTTAAAGGGAGCTGTTTTCTTGATCTAGGCTCTCTTTATCTGGATCTACTGGCCTGTTCTTCTGTTTTTTCATTCCATGTTTTATCCTTTATGGATCTACTGGTCATTTCCGTCAACCCCAAAGCCACTGCTGTTTATCTGGATCTTTTTTGCTGGCCTGTTTCTTCTGGATCTCGCCTCTACAGTTAGTTTTCCTGGATCTGCTGGCCATTTCCCCCCAGATATACTGTCATTCTTTATCTGGATCAACAAGCCAATCTACTGGACTTGTTTCTAGATGTACATGCTGGATTTTATTATTCTGTAATCTGGATTTACcttctattttgttttttatctgtGCTGGGGTTTTCTAGATCTGCATTCTGGTTTATTTTGGAGCTACATGTCATCTTTCTGGATCTGCATGCATGTTTTTCAGTATTCTGGATCTACAGGCTATTGTATTATAATCGATGGGCTGGGGTTTACTGGATCTACTGGACTGGTTTTCTGGATCTACAGGCTGTGTTTTCACCTGTATTCTGGATCTTTGGGTCTTCATTTTCTGGATTTACAGGGTGCTCTTCTCCTTGATCTGAAGTCCATTATTCTCAGGCTGTTTTTCTGTATTCTGTATCATCTTCTGAATCTATTGGCTGGGGTTTTCTGGATCTTCAGGCTGTTTTTTTCACCTGTATTCAGGATCTATGGGCTGCGTTTTTCTAGATATACTAGCAGTTTCTCTTTTTCTGGACTTAAAGGATGTTTTTTCTTGATGTAGTCTGCCCTTTTCTGGATCTGCTGGCCTGTCTTTCTGGATCTGCTGGTCTGTTTTTCTAGATCTCACCTCTACAGTTAGTATTTTCTGGATCTGCTGGTCTGTTTTTCTAGATCTCACCTCTACAGTTAGTATTTTCTGGATCTGCTGGTCTGTTTTTCTGGATCTCACCCCTACAGTTAGTTTTTCTGAATCTACTGGTCTGTTTTTCTGGATCTCGCCTCTACAGTCTGTTTTTCTGGATCTGTGCGCTGGGTTTTCTGTAACTTCTGCCAGAACTTCATTTTTCTGGGTCTACTTTATCTATTGGTCTTGATCTACAGGCTGGGCTTTTCTGGATTGTGTGTTTCCTTCAGTGTGCGGATGaggatgagtgagtgagtgtgtgtgtgtgtgtgatccagcAATGATGGTGTTTTTCTCCCAGTGATTCTCACATGCAGGTTCCTGCTTACCTTCCCTCATCAGACAGCAGCAGAGCAAACCAGACTCACAGCATCACAATACTcaactctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagctcagtcgccatcatacacacacactcactctaaGCCCAACACACACCTGCACACCTACACAAACTGAGCTTCCAGAATAAATAAGAGATATTACTTCAATCATACAACAACATGTCATTAGAGTCACTGTAAAATAGCAAAATAAGTCAAATGCTCTCATTATTGTGATCAGTTCTATATTCATTTTGTTATTAGAGGCTTAATTATTGCCATTTTTACTGCTGTTATTATCATCTGTGTTAGGCTGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049295 lncRNA downstream 22725 137544 ~ 138148 (-) True XLOC_024348
TCONS_00049066 lncRNA upstream 106588 272458 ~ 276103 (-) True XLOC_024358
TCONS_00049067 lncRNA upstream 110261 276131 ~ 277363 (-) True XLOC_024359
TCONS_00049068 lncRNA upstream 121789 287659 ~ 291265 (-) False XLOC_024360
TCONS_00048180 lncRNA upstream 122791 288661 ~ 291347 (-) False XLOC_024360
TCONS_00048181 lncRNA upstream 122791 288661 ~ 294609 (-) True XLOC_024360
TCONS_00048171 mRNA upstream 6461 172331 ~ 173165 (-) True XLOC_024350
TCONS_00048172 mRNA upstream 30443 196313 ~ 207214 (-) True XLOC_024351
TCONS_00048174 mRNA upstream 36453 202323 ~ 204019 (-) False XLOC_024352
TCONS_00048173 mRNA upstream 36453 202323 ~ 204019 (-) True XLOC_024352
TCONS_00048175 mRNA upstream 41552 207422 ~ 210730 (-) True XLOC_024353
TCONS_00048188 other upstream 322951 488821 ~ 490785 (-) True XLOC_024368
TCONS_00048212 other upstream 1463785 1629655 ~ 1629749 (-) True XLOC_024382
TCONS_00048237 other upstream 2850300 3016170 ~ 3034668 (-) False XLOC_024397
TCONS_00048288 other upstream 4159746 4325616 ~ 4325731 (-) True XLOC_024429
TCONS_00048296 other upstream 4724897 4890767 ~ 4904432 (-) True XLOC_024434

Expression Profile

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