RNA id: TCONS_00048173


Basic Information

Item Value
RNA id TCONS_00048173
length 486
RNA type mRNA
GC content 0.55
exon number 4
gene id XLOC_024352
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 202323 ~ 204019 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTGATCTATTAGCTGTGACCTTTGTTCCCTGTTGTCCTCAGGCGTTCGAGCTCGCCACCGGTGACTATCTGTTTGAGCCGCACTCCGGTGAAGACTACTCTCGTGATGAAGATCATATAGCTCACATCATAGAACTTCTTGGCTGCATTCCTCGACACTTTGCTCTTTCTGGAAAATATTCCCGGGAATTCTTCAACCGGAGAGACCACATCGCTCTGATTATGGAGTTACTGGGAAAAATCCCCCGCAAGATGGTCGCCGCTGGGAAATACAGCCGTGAGTTCTTCTCCAAGAAAGGCGAGCTGCGGCACATCACCAAACTCAAGCCCTGGTCCCTGTTTGACGTGCTGGTGGAGAAGTACGGCTGGGCGGCGGAGGAGGCGGGGCACTTCACACACTTCCTGCTGCCCATGCTGGAGATGGTGCCGGAGAAACGGGCGTCGGCCTCCGAGTGCCTCCATCACCCCTGGCTGAGCTCGTAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000188440

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049298 lncRNA downstream 36343 160873 ~ 165980 (-) True XLOC_024349
TCONS_00049297 lncRNA downstream 36453 160873 ~ 165870 (-) False XLOC_024349
TCONS_00049296 lncRNA downstream 40497 160873 ~ 161826 (-) False XLOC_024349
TCONS_00049295 lncRNA downstream 64175 137544 ~ 138148 (-) True XLOC_024348
TCONS_00049066 lncRNA upstream 68439 272458 ~ 276103 (-) True XLOC_024358
TCONS_00049067 lncRNA upstream 72112 276131 ~ 277363 (-) True XLOC_024359
TCONS_00049068 lncRNA upstream 83640 287659 ~ 291265 (-) False XLOC_024360
TCONS_00048180 lncRNA upstream 84642 288661 ~ 291347 (-) False XLOC_024360
TCONS_00048181 lncRNA upstream 84642 288661 ~ 294609 (-) True XLOC_024360
TCONS_00048171 mRNA downstream 29158 172331 ~ 173165 (-) True XLOC_024350
TCONS_00048170 mRNA downstream 33032 135932 ~ 169291 (-) True XLOC_024347
TCONS_00048175 mRNA upstream 3403 207422 ~ 210730 (-) True XLOC_024353
TCONS_00048176 mRNA upstream 13667 217686 ~ 244263 (-) True XLOC_024354
TCONS_00048177 mRNA upstream 18902 222921 ~ 225964 (-) True XLOC_024355
TCONS_00048178 mRNA upstream 50443 254462 ~ 255971 (-) True XLOC_024356
TCONS_00048179 mRNA upstream 61341 265360 ~ 269284 (-) True XLOC_024357
TCONS_00048188 other upstream 284802 488821 ~ 490785 (-) True XLOC_024368
TCONS_00048212 other upstream 1425636 1629655 ~ 1629749 (-) True XLOC_024382
TCONS_00048237 other upstream 2812151 3016170 ~ 3034668 (-) False XLOC_024397
TCONS_00048288 other upstream 4121597 4325616 ~ 4325731 (-) True XLOC_024429
TCONS_00048296 other upstream 4686748 4890767 ~ 4904432 (-) True XLOC_024434

Expression Profile

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