RNA id: TCONS_00048212


Basic Information

Item Value
RNA id TCONS_00048212
length 95
RNA type miRNA
GC content 0.53
exon number 1
gene id XLOC_024382
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 1629655 ~ 1629749 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTACTGGCTGAGGTAGTAGTTTGTGCTGTTGGTTGGGATGTGACATTGCCCGTTATGGAGATGACTGCGCAAGCTACTCCCTTGCCAGTGCTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000116791

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049305 lncRNA downstream 3737 1624880 ~ 1625918 (-) True XLOC_024381
TCONS_00049304 lncRNA downstream 3759 1624880 ~ 1625896 (-) False XLOC_024381
TCONS_00049303 lncRNA downstream 3766 1624880 ~ 1625889 (-) False XLOC_024381
TCONS_00049302 lncRNA downstream 3777 1624880 ~ 1625878 (-) False XLOC_024381
TCONS_00048211 lncRNA downstream 158470 1464379 ~ 1471185 (-) True XLOC_024380
TCONS_00049306 lncRNA upstream 316619 1946368 ~ 1951444 (-) True XLOC_024385
TCONS_00048217 lncRNA upstream 343775 1973524 ~ 1974290 (-) True XLOC_024386
TCONS_00048220 lncRNA upstream 382928 2012677 ~ 2013391 (-) True XLOC_024388
TCONS_00048222 lncRNA upstream 497067 2126816 ~ 2131450 (-) False XLOC_024389
TCONS_00048221 lncRNA upstream 497067 2126816 ~ 2131461 (-) False XLOC_024389
TCONS_00048208 mRNA downstream 202779 1343161 ~ 1426876 (-) False XLOC_024379
TCONS_00048210 mRNA downstream 208796 1343867 ~ 1420859 (-) True XLOC_024379
TCONS_00048209 mRNA downstream 281285 1343477 ~ 1348370 (-) False XLOC_024379
TCONS_00048205 mRNA downstream 295151 1325946 ~ 1334504 (-) False XLOC_024378
TCONS_00048207 mRNA downstream 295979 1326169 ~ 1333676 (-) False XLOC_024378
TCONS_00048214 mRNA upstream 2079 1631828 ~ 1687481 (-) False XLOC_024383
TCONS_00048213 mRNA upstream 2079 1631828 ~ 1687481 (-) False XLOC_024383
TCONS_00048215 mRNA upstream 5461 1635210 ~ 1642395 (-) True XLOC_024383
TCONS_00048216 mRNA upstream 65798 1695547 ~ 1720736 (-) True XLOC_024384
TCONS_00048218 mRNA upstream 372966 2002715 ~ 2081371 (-) False XLOC_024387
TCONS_00048188 other downstream 1138870 488821 ~ 490785 (-) True XLOC_024368
TCONS_00048237 other upstream 1386421 3016170 ~ 3034668 (-) False XLOC_024397
TCONS_00048288 other upstream 2695867 4325616 ~ 4325731 (-) True XLOC_024429
TCONS_00048296 other upstream 3261018 4890767 ~ 4904432 (-) True XLOC_024434
TCONS_00048299 other upstream 3711213 5340962 ~ 5341102 (-) True XLOC_024438
TCONS_00048304 other upstream 4298422 5928171 ~ 5928286 (-) True XLOC_024444

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU386992 True 345 lncRNA 0.43 1 CI01000127 745402 ~ 745746 (+)
rainbow trout (Oncorhynchus mykiss) TU103618 True 249 lncRNA 0.41 3 NC_048565.1 83159570 ~ 83162155 (-)
mexican tetra (Astyanax mexicanus) TU103618 False 1423 lncRNA 0.43 2 NC_035904.1 26684068 ~ 26685628 (+)