RNA id: TCONS_00048215


Basic Information

Item Value
RNA id TCONS_00048215
length 1376
RNA type mRNA
GC content 0.47
exon number 6
gene id XLOC_024383
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 1631828 ~ 1687481 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACTGTGAGGATTCCTCTGGGCCTGAAATACGCCTGTCCTGCTGAGAGCACCTGGAAACTGGCCGTCTCCTCGCTGCTCAAAGTGCTTTCCATTGGACTCCCTGTTGCTCGGCAACAAGCATCATCAGGAAAATTCGACACGATGTGGCCGGAGCTGGCGAACGCCTTCGAGGACTTCCTGTTTACCAAGAGCACACCTCCAGATAATCTGTCCATACAGGAGTTCCAGAGGAATGAAGCTGTAGATGTGGAGgTGGTGCAGTTGATCAGCTCAGAGATTTTACCATTTGCCAATTTCATACCCAAAGAGTTTGTGGGCCGTATCATGAGCATGCTGAATAAAGGATCGATCCACTCGCAGTCTTCATCATTCACAGAGGCTGAGATGGACATGCGCATGCGGGAGGATTTCTCCAAAGTGTGCTTCGAGACGCTCCTGCAGTTTTCCTTCAGTAATAAAGTGTCGACGCCGCAGGAGGGCTTTATCTCCCGCATGGCGCTGTCGGTGCTGCTGCAGCGGGCGCAGGACGTGCTGCGACGATACGTGGAGGACGAGCGGCTCAGTGGACGCTGCCCGCTGCCCAGGCAACAAGTGACTGAGATCATCTTTGTGTTAAAAGCCATCAGTACTCTCATGGATTCCCTGAAAAAGACGCAACCGGAGAACGTGGATGGGAACGTTTGGGCTCAGGTGATTGCGTTGTACCCAACGCTGGTTGAATGCATCACCTGCACATCTCCTGAAGTCAGTTCGGCCCTTAAAGACGCCCTGGGGCCCTTTAAAGACTTCATGCAGCCGCCCGTCTCCAAAGTGCAGAACGGCGAATCGTGACTGAACGTTTTTACTCTACCGCGAACATGAATATGACTGTTTCATACGCCGAGCGTGAGGACACCGATTCAGCCCCATCGTCATGGTAACCGTTGACTGACAGCTCCGAAATCCCATCTTTCTGAAGTTAATTCTAATATGAGCTGACAATAGTCTCTGATTGGCCGACTTTAACGATGTATTAACTGCTATGTTAAATTTGCAGTGTTGTttttatgggtttatttcttgATCTCCCCCTCCCCCCACTTCCCTCCCCATCTGGAGTTGATGTACAGTGTTTGGTGATAGTGTTAAAGATGTAATTAAGAAACACGTATTTGGATTGAAAATCAGatccaaaaatcatttaaaagagAGAATGAAAAAACTAATCATGATAATTACATGAAGGAtggtcttttttttgtgtgtgaagttTTCTCAACAGCAATGGATTTTATGCAAGATCTTACTGTAACATTCCACGTCATCTTTAGTCGCATTAAGAAGGGTTGAACCTGGTGTGTGTACAATAATAAATGGTACAGTTCTATGAACATC

Function

GO:

id name namespace
GO:0015031 protein transport biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2712 Predicted to act upstream of or within protein transport. Orthologous to human MON2 (MON2 homolog, regulator of endosome-to-Golgi trafficking).

Ensembl:

ensembl_id ENSDART00000168806

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049305 lncRNA downstream 9292 1624880 ~ 1625918 (-) True XLOC_024381
TCONS_00049304 lncRNA downstream 9314 1624880 ~ 1625896 (-) False XLOC_024381
TCONS_00049303 lncRNA downstream 9321 1624880 ~ 1625889 (-) False XLOC_024381
TCONS_00049302 lncRNA downstream 9332 1624880 ~ 1625878 (-) False XLOC_024381
TCONS_00048211 lncRNA downstream 164025 1464379 ~ 1471185 (-) True XLOC_024380
TCONS_00049306 lncRNA upstream 303973 1946368 ~ 1951444 (-) True XLOC_024385
TCONS_00048217 lncRNA upstream 331129 1973524 ~ 1974290 (-) True XLOC_024386
TCONS_00048220 lncRNA upstream 370282 2012677 ~ 2013391 (-) True XLOC_024388
TCONS_00048222 lncRNA upstream 484421 2126816 ~ 2131450 (-) False XLOC_024389
TCONS_00048221 lncRNA upstream 484421 2126816 ~ 2131461 (-) False XLOC_024389
TCONS_00048208 mRNA downstream 208334 1343161 ~ 1426876 (-) False XLOC_024379
TCONS_00048210 mRNA downstream 214351 1343867 ~ 1420859 (-) True XLOC_024379
TCONS_00048209 mRNA downstream 286840 1343477 ~ 1348370 (-) False XLOC_024379
TCONS_00048205 mRNA downstream 300706 1325946 ~ 1334504 (-) False XLOC_024378
TCONS_00048207 mRNA downstream 301534 1326169 ~ 1333676 (-) False XLOC_024378
TCONS_00048216 mRNA upstream 53152 1695547 ~ 1720736 (-) True XLOC_024384
TCONS_00048218 mRNA upstream 360320 2002715 ~ 2081371 (-) False XLOC_024387
TCONS_00048219 mRNA upstream 360788 2003183 ~ 2081371 (-) True XLOC_024387
TCONS_00048224 mRNA upstream 690863 2333258 ~ 2355107 (-) True XLOC_024392
TCONS_00048233 mRNA upstream 1064327 2706722 ~ 2723902 (-) False XLOC_024396
TCONS_00048212 other downstream 5461 1629655 ~ 1629749 (-) True XLOC_024382
TCONS_00048188 other downstream 1144425 488821 ~ 490785 (-) True XLOC_024368
TCONS_00048237 other upstream 1373775 3016170 ~ 3034668 (-) False XLOC_024397
TCONS_00048288 other upstream 2683221 4325616 ~ 4325731 (-) True XLOC_024429
TCONS_00048296 other upstream 3248372 4890767 ~ 4904432 (-) True XLOC_024434
TCONS_00048299 other upstream 3698567 5340962 ~ 5341102 (-) True XLOC_024438
TCONS_00048304 other upstream 4285776 5928171 ~ 5928286 (-) True XLOC_024444

Expression Profile

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