RNA id: XM_036956233.1


Basic Information

Item Value
RNA id XM_036956233.1
length 4345
RNA type mRNA
GC content 0.47
exon number 28
gene id col21a1
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 34225871 ~ 34271548 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agggggaagaaagtgagaaggggaggcagggggagagagagagagacagagaactggAAAGTGAATGGAGAGGGCAGGCTTTCAGTCACAGGAGGAACATTTGGTGCAGTGCTGAAACTTCTTCCCCAAACACAGCTTCTTCTTCTACCTAGACCTTGCCACGGTTATGGCCACAGGGCACATATGAGAAGGTGACGGGGGACACTGACACTCGGACTACACTAACCACTGatcacgggATCGGGCCTGTTCTCGAGGAAGCAGTGTATCCTTCGTGTCGGGCTCATCATAGTTGTGAAAGGAAAAagaggattctgctagtccgtcGAACTTGTTTCCAGACGGCCTGCCTCCGTCCTACGTCTTTGTGTCCACACTGAGGTACAAGGGGTCTCTGCTCAGGGAAGAGTGGGACTTATGGAGGGTACAGACCAATAACGGGAAACCACAAATGGCTGTCACACTTAACGGATTTGAACGCAATGTCAAGTTCACTACAACCAGTGTAGCACCAGGTGATACTCAGACAGTGGTCTTCCAACAAGAACCTTCCAAGAAACTATTTGATGAGAACTGGCACCAGCTTCGCCTACTGGTCACTGAGCAGGATGTTACCCTGTATGTTGATGACCTGGAAATTGAAACCATGCCATTGGAACCTCCTGTTGGTATCTTCATTAATGGGAAGACCCAGATCGGAAAGTATGTCAGCAAAGAGACGACTGTACCATTTGAGATTATGAAACTCAGGATCTACTGCGACCCCGAGCAGAACAACCGTGAGACTGCCTGTGAAATACCTGGAGTTGACGGCGAGTGCGCCAATGGTCCTGGTGACAtagacgtggaccccactccagaACCATGTACCTGTCCTCCCGGACCTCCTGGTCTTCAAGGAATGAAGGGGGAAGCAGGAACAATGGGGAACCCAGGTCAAGCTGGTCCTGCTGGTGCTGATGGTAAGCCTGGTGTGCCTGGTAACCGAGGGATTCCTGGACCGCAGGGTCCAACTGGGACAGAGGGGCGACGCGGGGTTGATGGCAACAAGGGAGAACAAGGACGGCCTGGTGATTCGGGTGAAAGAGGGGTTCCGGGATTACCTGGGCCATTGGGTCAAGCAGGTGAAAAGGGCTCTATGGGTCTTTCAGGGGGATCAGGACTTGCCGGCAAAGATGGCCTAGTGGGAGAAAAAGGAGCCAGGGGATTCTCTGGGCCATCCGGACATCCGGGAGTACCAGGTTTACCTGGAAGGGATGGAAAGAACGGAGTCCCAGGACAAATCGGTCAAAAGGGAGAGGTTGGAGCAGCTGGCATCCCTGGTCTAGACGGAAGGGAGGGCCATCCTGGTATGCCTGGCGAGCCTGGAAATGAGGGCCAGAGTGGAACTAAGGGTGAAGATGGTTTACCAGGACCGAAGGGAGCCAAAGGTTCCACTGGACTATCTGGGGACAATGGATTGCCTGGTGAACCTGGATCATCAGGACAACCTGGACCTAAGGGCAGCAAAGGTGAAAGTGGACTTCCAGGTCAACCAGGGGTTCCAGGACAGGAGGGCAAGTCAGGTGACCATGGTGGAGCAGGTCAGCCAGGACACCCAGGAATGCCAGGCCTGACAGGACCTAAGGGACAAAGGGGAGATCCAGGTGAACGAGGAGGGGAGGGATTGAGAGGTGAAAAAGGAGATATGGGAATTCCAGGGAATCATGGCTCTAATGGCTCATCGGGACAAAAAGGAGAGAAAGGGACAACAGGAGACCCCGGTCAGAGGGGACTAGGAGGTCACCAAGGCCAGCCAGGACTATCTGGGCAGACAGGCCCACCTGGGCCTCGAGGACAGAGCGGGGACGTTGGCCCTCTTGGGCCACCTGGACTAGAGGGGAGACCTGGAAGGGAGATGTCCAAGCAAATAATTCAGGAAATATGCAGAGAGGTACTTAGATTGGAGATGCCTTCACTACTCCTCAGTAACCAGCAGCTGAGTAACTGTGACCACTGTCAGACCAGGGACGGGACTCCGGGGGTACCAGGCCCGGTTGGGCCCCAAGGATCTACAGGCTTTCCAGGGAACCCTGGTTCCAGTGGACAGCCAGGTCATCCAGGTCGACCTGGGCATCCTGGGATGCTTGGCTTGAAAGGAGATCCTGGTTTAAAGGGTGAGAAGGGCAGTCAAGGAAGAACAGAGATTGGAGATCCGGGAACACCAGGGCCTCCAGGTCAAATGGGTCCCCAGGGGTACAGTAAACCAGGCCATCCAGGGAAGCCAGGAGCCCCTGGCTTAAacggggaggaggggaagagaggtaaCCCTGGGGTCCCGGGCCAGCCGGGGGTGTGTCATCTATCCATGTGTTACGGTGTCATGATGAGGAGCAGGGATCCTTTTAGTAAAGGACCAAACTATTGACCCAACATGGCAGCAGGCAGGCAATCAAACAGTCTGGAGTAGATGCATACATCGCAAAGAAAAACAGCAAATCTTTCCAATCTCAGGAAGATCACATTTTACAGTGTTTCCCATTAGTCACGGAAACAGGAAGTACCTCTTAACATGTATATAGCAAAGATACTCATGTGCATCCTTTCATGACCTTTATCAAGCccagtttatacctggttctaacctgGTCCTtcgtcctgatcttgtccacattttGACTGTGCCCACATTTTGAGACAGGTGTAGACAATTATAAGATCTGTGAtctgtgatctgattgtgatcgAATCTTCCTGACCAGCTTCTTAGGTAGTCAGGCACACGTTGGGTTTGGAAATACCTGTGTAGACGAATCTGGACAGATGGCACCATTGACTTATGTCATCAATATgtgtcttaaaataaataaagattATTTTGAAAGAATAACTGTGAAATAATTTGCATACAGGGGTGGGCCAGGTAATCTGGTCACAATGCATGCACAGTGGACGGATAAGAGATTACATTTCTGAAAATTCAGGAACAATCacaatgtggacaagatcaggacacagGATCCATATTTGCAGCAGGTATAAACCGGCtttagaggggaaaaaaacatattAATTCTGTCCTTGTCACATTCTGCTTGTTATGTCATGGGCTCCATTTTGCTTTAAAGGGATAGTACAACATTTTGGCCTTTTTGTACTtgcccagagtcagatgaactcatggataccatttgtatgtctctgcagGCAGTTTGAAGGTAGTTTCTGGAGCCATTGCTatctagcattagcacaatgacagGAAGTCTACAGGAACAGCTACAGGAAGAGCTAGCATGAAAAAATGTTTCACTATCCCTTTAAAAGAATGATAGTAATTGCTCCTACATTTGGATGGCTTTGGTTGGCATTGGTTAGATTCTGAGCCAAATAGCAATACAACAAATCCAATGTAAAGAATTCTACATTGCTCACAGAAGTACACAGGAATAAAGGGTTGGTACTCCACTTGGACAATGCTGATGGTACATTTTCTTGCCATATACTGCCCCCTGGTGTTGGTGTTTTTGCACCATACTTTTTGATTGGTCACCCCAAAATTATGCATTTTTTGCACCAGACTTTCTGATTGGTCACCCCAAAAATGAAGTGTTTTTGCACCATTTCTTTTTCATGGTCACCCCTCAATTTGTTTCGCAaatttgtttgtatttttttatgaaatatTTAAAGACCCTGTAATGTATTATAATTTGTAATTTGACAAATAAAGTTGTAAACAACATCTAAATAATTATGACATAGTTTCAGGGCAAATCTGTGAGCTTACTATCTCTATAATGGAGGCTGCTATGTTTATGAAACATTTAGATGAATAAACATAGAAAAGCCATAATCTAAAACCTGTGTGGATTACAGCGATGCTATTTCAGTTTATATtccttttaaaacatttttttttttacaaaaactaGTTTATATATTGTATGAAAAATACATtaacaagtatttttttttaacttgagTAGAGGATAGGCCTACCTACTATAACAAATGTAAACCTGGGAAATCCTAGCTACTTTCTGCCAAAAGAGTGAGGGATAAATGAAACATGTTGACATCTTGACTTAATCTGAAGTTTGCTCTGTTGCAAATGTTTTACTGTTCGCGCATATATGACATTTATGTGCCTGAGTACCTTACCTTACCGTACCTTGTCTTACCTTAGCCTATCAAGTTGAAGTATTTTTGGTTATTTATAAAACTGAACTAATTTACTGTGTACTGATGGGCTTTACCTGTGAGAGCATGGTCGTTTTTTTTGCTGTGTCTAATTTTGTATGTGTAATGATGACTTTTGTATTGACTTTTGGTATCATTAATTAAAACTTTTTTATGACGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1930327 lncRNA upstream 13265 34212383 ~ 34212610 (+) True G1687628
TU1930326 lncRNA upstream 13966 34211533 ~ 34211909 (+) True G1687627
TU1930277 lncRNA upstream 205119 34020460 ~ 34020756 (+) True G1687581
TU1930210 lncRNA upstream 255829 33969104 ~ 33970046 (+) False G1687545
TU1930379 lncRNA downstream 53819 34325367 ~ 34325584 (+) True G1687674
TU1930381 lncRNA downstream 54788 34326336 ~ 34326687 (+) True G1687676
TU1930384 lncRNA downstream 57394 34328942 ~ 34329146 (+) True G1687679
TU1930386 lncRNA downstream 60271 34331819 ~ 34332148 (+) True G1687681
TU1930401 lncRNA downstream 79082 34350630 ~ 34354756 (+) True hmgcll1
XM_021576467.2 mRNA upstream 16889 34184080 ~ 34208986 (+) False zmp:0000000760
XM_021576465.2 mRNA upstream 16889 34184081 ~ 34208986 (+) True zmp:0000000760
XM_036956226.1 mRNA upstream 46944 33984466 ~ 34178931 (+) True LOC110499368
XM_021576451.2 mRNA upstream 267147 33949753 ~ 33958728 (+) False rab23
XM_021576472.2 mRNA downstream 2319 34273867 ~ 34312150 (+) True bmp5
XM_021576477.2 mRNA downstream 75606 34347154 ~ 34379366 (+) False hmgcll1
XM_036956235.1 mRNA downstream 78937 34350485 ~ 34354777 (+) False hmgcll1
XM_021576476.2 mRNA downstream 78971 34350519 ~ 34379366 (+) False hmgcll1
XM_036956236.1 mRNA downstream 79362 34350910 ~ 34354777 (+) False hmgcll1
TU1929194 other upstream 1040599 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 1564227 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 4649317 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 4649317 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 4767954 29457228 ~ 29457921 (+) True lhcgr
TU1930380 other downstream 54289 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 1110161 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 1110161 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 1409819 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 1429672 35701220 ~ 35702139 (+) True LOC118942012

Expression Profile