RNA id: TCONS_00050588


Basic Information

Item Value
RNA id TCONS_00050588
length 1650
RNA type mRNA
GC content 0.44
exon number 10
gene id XLOC_025720
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 50310684 ~ 50420221 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGCAACAAAGCAGCAGTCAGAGTCAAGCACTGCCTGCAGAAAGAGTGAGATCGTCAAAGAAAGACAGGAGGCACGAAGCAATGGAGATGGAGGAAAGCTTTGATGCAGAGGGCAGTTTTGATGATCCCTCCTATCTGTCCCCCCAGAGTCCAGGGTCCACGTCCCCGGCCAGGAGGCAAAATAAGGAGATCAAGGAGACCAAAATCACTATCAACTGCGTCACATTCCCTGTGTCCACATCCACACCGGAGCAGGAGCTTCTCAAGCCCAATGAATGGAGCTACTGCGACTATTTCTGGACCGATAAGAGAGACCTTCAGGGGGCCACAGTGACCGGCTTCGAGGTGCTGCTGCAGAAACAGCTAAAGGGGAAGCAGATGCAAAAAGAGATGGCAGAGTTCATCAGAGAAAGGATAAAAATTGAAGAGGAATATGCCAAGAACCTTTCCAAACTCTCCATGTTCCCTATGGCAGCACAAGAGGAAGGGACTCTTGGAGAAGCTTGGGCTCAACTCAAGAAGAGTCTAGCAGATGAAGCCGAAGTTCATCTCAAGTTCTCCTCAAAGCTCCAGAGTGAAGTGGAGAAGCCTTTATTAACTTTCAGAGGAGACAACTTTAAAAAAGACATGAAGAAATATGACCACCACATTGCTGACCTGAGAAAGCAGCTGGTCAGCCGATACGCTGCAGTGGAGAAGGCACGGAAGGCTTTAGCAGACCGACAGAAGGATCTTGAGGTGAAAACCCAGCAGCTTGAGATCAAATTAAGCAACAAATCAGAGGAAGATATAAAGAAAGCCAGACGAAAATCCACACAAGCAGGTGATGATCTGATGCGCTGTGTGGATCTCTACAATCAGGCTCAGTCCAAGTGGTTTGAGGAGATGGTCACCACAAGCATGGAGCTGGAGAAGCTGGAGGTGGAGCGGATAGAGATGATCCAGCAGCATCTGCGTCAGTACACCACACTGCGGCACGAGACAGACATGTTCAACCAAAGTACACTGGAGCCAGTGGATCAGCTCCTGCAGAGTGTGGATCCAGCAAAAGACAGAGAGCTTTGGGTGAAGGAGCACAAGACAGGAGATCGGAGACCTGTGGATATGGACATCTAGACCatacatgcacactcacacagacacaaacacaataTGAATCTACCTGCATGCCTGTTTTCCTGAGTACTTCAACCTCTCAGCCAAAGCCATACAGGTATCACCCCTTGAAGCATTACAAAATATAAGCTTTACAGAagactttttaaatgttataatgtCAAGAGTAGTGGGAAGGAACAGCAGTGCGTTACAGTTTTTTTAGTAGCCATTTTATCCTGCATGTCCAAATTTATTATGCTACTTAATACTTCAGAGTGTTTATTACTGTACGTGTAACATCATTACAATAGACATCAGTGCTATAGATCGGAAAAGCACTGTAAAAGTAAagcacctgtttgtttgtttatttgcttcaGCAGATGCCTATAAAGTGGATTACATCGaatcagattttattttgaaatgttgtgAAGAAAGTGAACTAAATAGCTAATTGTAGATATATGGGTCAAAGATGAGGAGCCCCATTTAAAGTTAGTTGTCTatattaatgtttcaaataatttaaattaaaaagtcaaaatatA

Function

GO:

id name namespace
GO:0043009 chordate embryonic development biological_process
GO:0030182 neuron differentiation biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0048666 neuron development biological_process
GO:0030041 actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005884 actin filament cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0051015 actin filament binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130128-1 Predicted to enable actin filament binding activity. Acts upstream of or within chordate embryonic development and neuron development. Predicted to be active in actin filament; cytoplasm; and plasma membrane. Is expressed in several structures, including brain; eye; neural plate; segmental plate; and tail bud. Orthologous to human GAS7 (growth arrest specific 7).

Ensembl:

ensembl_id ENSDART00000157689

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052792 lncRNA upstream 23934 50286780 ~ 50288488 (+) False XLOC_025719
TCONS_00052793 lncRNA upstream 23934 50286833 ~ 50288488 (+) True XLOC_025719
TCONS_00050579 lncRNA upstream 242132 50069610 ~ 50070290 (+) False XLOC_025717
TCONS_00052790 lncRNA upstream 551726 49753768 ~ 49760696 (+) False XLOC_025716
TCONS_00050589 lncRNA downstream 117690 50537127 ~ 50552748 (+) True XLOC_025721
TCONS_00052794 lncRNA downstream 375884 50795321 ~ 50796217 (+) True XLOC_025723
TCONS_00052795 lncRNA downstream 389200 50808637 ~ 50809193 (+) True XLOC_025724
TCONS_00052375 lncRNA downstream 591852 51011289 ~ 51011570 (+) False XLOC_025725
TCONS_00052376 lncRNA downstream 591852 51011289 ~ 51023057 (+) True XLOC_025725
TCONS_00050586 mRNA upstream 43277 50201240 ~ 50269145 (+) True XLOC_025718
TCONS_00050582 mRNA upstream 46333 50155245 ~ 50266089 (+) False XLOC_025718
TCONS_00050590 mRNA downstream 183429 50602866 ~ 50781505 (+) False XLOC_025722
TCONS_00050591 mRNA downstream 183443 50602880 ~ 50611009 (+) True XLOC_025722
TCONS_00050593 mRNA downstream 1144258 51563695 ~ 51657722 (+) True XLOC_025727
TCONS_00050594 mRNA downstream 1240721 51660158 ~ 51677340 (+) False XLOC_025728
TCONS_00050595 mRNA downstream 1240721 51660158 ~ 51677582 (+) True XLOC_025728
TCONS_00050578 other upstream 237232 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050573 other upstream 1179945 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050561 other upstream 2851819 47460488 ~ 47460603 (+) True XLOC_025690
TCONS_00050528 other upstream 4677236 45635077 ~ 45635186 (+) True XLOC_025668
TCONS_00050515 other upstream 5424269 44888037 ~ 44888153 (+) True XLOC_025662
TCONS_00050613 other downstream 2200621 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050620 other downstream 2409475 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050635 other downstream 3648086 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050662 other downstream 4879606 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050664 other downstream 5064076 55483513 ~ 55483647 (+) True XLOC_025789

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000334_00049341_00064168.mRNA True 951 mRNA 0.47 6 CI01000334 48999 ~ 64168 (-)