RNA id: TCONS_00050590


Basic Information

Item Value
RNA id TCONS_00050590
length 2049
RNA type mRNA
GC content 0.38
exon number 5
gene id XLOC_025722
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 50602866 ~ 50781505 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGATAGCATTAGAGACGGAGTTGAATTAGAGCAGCTGGCATTCGTGAAAGCTCAGTGGCCGTCCAGCTgctcaatcaagaaaaagaaagcaCTGATGAGACACACACATCTACAAGATCCAATCAACCTCAAGATACTCACTGCAATAAGTTTGAATGTCTGAATCAAGGAGCCCAAAGCCAGGATTACTCATCTCCTTGTGCCTCCTGGATCACAATGGGTATACAGCGAGCTCAGAGGGCATCGCTGGCTCTTACACTCAACTATGTGGCATTCGTAATGGCAGTCTCAGCCGTTACCACCAGCTACTGGTGTGAAGGGACCAGAAAAGTGGTGAAGCCTTTCTGTATGGGACCAGTGAAAGGCAAGCAGACGTACTGCATTCGTTTTAACAGCACCAACGTCAATGACACAAAGCTGGTGCAGTACATCTACGAGACCGGAGAAGAAAAGTTTCTCATGAGGAAGTTTCATGCAGGCATTTGGTTCTCCTGTGAGCAAACCATGGACTTAATAGGATTTAATTGTAGGAGCTTTTTTGAGATTGCACCAGATCATGAAAGAGgaGTTCTCTGGTTGTGTATTGTGGCTGAGTGTCTGTATATTGCTCTGCTGTTCACCGGTGGAACTCTGATGCTGATAGAGATGTGTCCATGCTTTAGCATGATGAACAGACTCAAGCTCAGTGCCTTTGCAGCTCTGTGCACTGCTCTCTCAGGTCTTTTTGGGATGGTTGCACATATGATGTTCACCACAGCTTTCCAGCTGGCAGTCCAGCTTGGTCCAGAAGACTGGAGACCAAAGACATGGGACTACAGCTGGTCTTATCTtctGGCGTGGTGTTCGTTCGGCACCTGTATGAGCTCTGCGGTCACAGCTCTAAACCATTACACCAAAACCATCATTGAGTTCAAGTTCAGGCGGAGGACCATTGAGAAGAAACTGCGCATCAAGCAGAGGATTCTGGAGCTTGACCTGCCAGAAGACTTATGGTACATAACATTATTACAAGACCAAGCAGACCAACACACTACTCTGTATGTAAATGGCCCTGGATCATCCTGCATCAACCCCAGTATACTGGACAACTGGGACAGAGAATACTGCTAAAAATCCACTGATCCACTTCTGCACATGATTTTGTgctgaaaattttattttattgggcTATATTCAAGAGAGCAATATATTGACTAAGTTCTGCTTTTGTTCTAATacgattaatttattaatttaattgaggtttaaaaataattataagttAAAGGAAGAGTTCattcaaaactaaaaattctTTCTTCATCTACTATTGCTTAACTTCTCACAAACCTTTTGTTCTGATGAACAAAAAAGAtgtgtaaacctgtaaccattgacttacatagtatttgttttatagtCAATGGTTAAAAGTttgtaacatttttcaaaatatcttcttttgtgttaataaaataagttatatgttattttgtgttcactcataaaggtttggaaccacattGATAAATGAtgtgtaaatttgtatttttggtcaAATGTCACATTGCATTTTTTCTCAATtgccaataaataaaaataaataaataaataaataaatacatacatacatgcatacatacatacatacatacatacatacatacatacatacatacatacatacatacatacataaataaattgaaataagtTCTCAGTTGCCTGCCCTTATTTAGCGAACTGCGCAGTCTGTTGGCAATACCCTAAACCATTTCACATGGTAAAGCGCAATAGGTGAGAAATGATGTCAGGGTTGTATACGGCACACAAGAGGCttcttcaatttaattaaattcatttagcacttttacaatgtagattgtgtcaaagcagtttcaaatagaagttctagtaaattgcaATTGAAAATGGTTGGGGCGTATTGTTTCACTTAACTCACAAATCGATACGATTCACGATTTagtcaatatgttttttttattatattttttaaacaatattagttaaaacaaatttaaggtaaaaaaaaaaatatatatatatat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000190069

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050589 lncRNA upstream 50118 50537127 ~ 50552748 (+) True XLOC_025721
TCONS_00052792 lncRNA upstream 314378 50286780 ~ 50288488 (+) False XLOC_025719
TCONS_00052793 lncRNA upstream 314378 50286833 ~ 50288488 (+) True XLOC_025719
TCONS_00050579 lncRNA upstream 532576 50069610 ~ 50070290 (+) False XLOC_025717
TCONS_00052790 lncRNA upstream 842170 49753768 ~ 49760696 (+) False XLOC_025716
TCONS_00052794 lncRNA downstream 13816 50795321 ~ 50796217 (+) True XLOC_025723
TCONS_00052795 lncRNA downstream 27132 50808637 ~ 50809193 (+) True XLOC_025724
TCONS_00052375 lncRNA downstream 229784 51011289 ~ 51011570 (+) False XLOC_025725
TCONS_00052376 lncRNA downstream 229784 51011289 ~ 51023057 (+) True XLOC_025725
TCONS_00050592 lncRNA downstream 635917 51417422 ~ 51446996 (+) True XLOC_025726
TCONS_00050587 mRNA upstream 182645 50310684 ~ 50420221 (+) False XLOC_025720
TCONS_00050588 mRNA upstream 183429 50312422 ~ 50419437 (+) True XLOC_025720
TCONS_00050586 mRNA upstream 333721 50201240 ~ 50269145 (+) True XLOC_025718
TCONS_00050582 mRNA upstream 336777 50155245 ~ 50266089 (+) False XLOC_025718
TCONS_00050593 mRNA downstream 782190 51563695 ~ 51657722 (+) True XLOC_025727
TCONS_00050594 mRNA downstream 878653 51660158 ~ 51677340 (+) False XLOC_025728
TCONS_00050595 mRNA downstream 878653 51660158 ~ 51677582 (+) True XLOC_025728
TCONS_00050596 mRNA downstream 903458 51684963 ~ 51892737 (+) False XLOC_025729
TCONS_00050597 mRNA downstream 903556 51685061 ~ 51926927 (+) False XLOC_025729
TCONS_00050578 other upstream 527676 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050573 other upstream 1470389 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050561 other upstream 3142263 47460488 ~ 47460603 (+) True XLOC_025690
TCONS_00050528 other upstream 4967680 45635077 ~ 45635186 (+) True XLOC_025668
TCONS_00050515 other upstream 5714713 44888037 ~ 44888153 (+) True XLOC_025662
TCONS_00050613 other downstream 1838553 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050620 other downstream 2047407 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050635 other downstream 3286018 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050662 other downstream 4517538 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050664 other downstream 4702008 55483513 ~ 55483647 (+) True XLOC_025789

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000334_00024219_00034066.mRNA True 1710 mRNA 0.46 5 CI01000334 24020 ~ 34554 (-)