RNA id: TCONS_00004866


Basic Information

Item Value
RNA id TCONS_00004866
length 1589
RNA type mRNA
GC content 0.34
exon number 5
gene id XLOC_002617
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 9397305 ~ 9410068 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCACGCTGTTGCTTTGCTGTAGGTCAACATGGAGCTCATGGGTAGCAGTTATGACGGAGATTATAATAATGgaagGATGGAGGGGACAGGCGAATACACAATCCCCACTCACACCAGATATGTTGGAGAAATGAAAGATGGCATGTTCCATGGAAAAGGAGTGTTGCATTTCCCCAATGGAAGCAAATATGAAGGGACTTGGGAGAAAGGAATATGCAAAGAGGGAAAGTATACATTTTCTGATGGCCTGAAGTATAAAGAGACTGACTGGGATTACTGTGATGGCAAAGACAGGCGTTTCTACTCTGAGAGATGTAATGGCCTCAAACCAGCAGGGGAATCCCAGTTAACCGATCCAGACCCCCCGCGTGTTATTCCTGATGGATGCTATGACACTGGTGATGGCTTTTATGATCCCAATACAAGAGTCGTCAAAGGCTATGATGGCAATTTTCTCAGGAATGCAGatgACCAAGAACACGAGTGGATTGTGCTGAGCTGCAGGAAGAGCTTGGATGAGTTCACTGGCTATTGTCCAAGAGCAAGCACACTAGAAGAGAAGTGAGAATACTCACACACAGACAGCCCATTGTATATGGATGACATCTGAATGACACATTAATGCAGCTTTGagatgctgtttttttcagtacagTTGAATAAATCAAAGCAGGTTTGTAATGGAAAACGTAAAATAAAATGTGAGGTTGCTAAAAGTGATATAAGCATATCTATAAACAACAGTTTAtagagatagttcatccaaaaaataaacatttactcaccctcaagttgttccaaacttttattcaaatatttatttttttttttatatttggctGAACACGCACAAATACAATTTGAAGATTGTTGACTTCTGTAATAGggaaataaatactatttatgtCAATAGGGATAAACAACAGCTTGGTTATACAAGTTTCtacaaatatcttttttgtgttcaacagaagaataaaaCTTTTACTGGCTTGGAACAATTgttaatttttggatgaaatatCCCTTCAACAAATTAATAGTttcattattatatacattatatactgaaaaaaatatgtctgcaaaactgttgcaaacaatttatttgtgttgaatttaaacaaacgaaccaaatttaataaaattcaacttaatttgtttgcttaaattcagcccaaataaattgtttacagccacttaatgttaaaaaaatttgtatatccaaggaatcatctctgaacaatttttttcagtgcacttaaaaaaatgtattgcttgttcaaactacttattacaaataagctgaaacaacacaactcttcatatttcattaggacaacttatttttttatgttgttttttatgttcaatccacataaatttgttaagtgttaacttaatcagtttgtgttgggacaacatgagtgaattgtgtggaaacctgcatttttacagtatattccAATGTTACATGTTCAATGTATGTcctttgtgtttttaattattaagctcaaaaaaaatgtttggttgtGTAAGCCATAATGTTGGTATTCTAATATATTAACCAACCCATTTGGGTTACAAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-267 Orthologous to human MORN5 (MORN repeat containing 5).

Ensembl:

ensembl_id ENSDART00000041382

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004864 lncRNA downstream 127594 9264673 ~ 9269711 (-) True XLOC_002614
TCONS_00004863 lncRNA downstream 128056 9264673 ~ 9269249 (-) False XLOC_002614
TCONS_00005750 lncRNA downstream 129594 9266053 ~ 9267711 (-) True XLOC_002615
TCONS_00006002 lncRNA downstream 205550 9190097 ~ 9191755 (-) True XLOC_002613
TCONS_00006001 lncRNA downstream 250663 9145508 ~ 9146642 (-) True XLOC_002612
TCONS_00004867 lncRNA upstream 124547 9534615 ~ 9536874 (-) False XLOC_002618
TCONS_00004868 lncRNA upstream 124703 9534771 ~ 9537977 (-) False XLOC_002618
TCONS_00004870 lncRNA upstream 124736 9534804 ~ 9537589 (-) False XLOC_002618
TCONS_00004871 lncRNA upstream 126008 9536076 ~ 9538300 (-) False XLOC_002618
TCONS_00004872 lncRNA upstream 126574 9536642 ~ 9537975 (-) False XLOC_002618
TCONS_00004865 mRNA downstream 50945 9305050 ~ 9346360 (-) True XLOC_002616
TCONS_00004862 mRNA downstream 127572 9247593 ~ 9269733 (-) False XLOC_002614
TCONS_00004861 mRNA downstream 204855 9190065 ~ 9192450 (-) False XLOC_002613
TCONS_00004860 mRNA downstream 206474 9186651 ~ 9190831 (-) False XLOC_002613
TCONS_00004858 mRNA downstream 281922 9105007 ~ 9115383 (-) True XLOC_002610
TCONS_00004874 mRNA upstream 424828 9834896 ~ 9961488 (-) False XLOC_002620
TCONS_00004875 mRNA upstream 425611 9835679 ~ 10018794 (-) False XLOC_002620
TCONS_00004876 mRNA upstream 427224 9837292 ~ 10016348 (-) False XLOC_002620
TCONS_00004877 mRNA upstream 474335 9884403 ~ 10018120 (-) False XLOC_002620
TCONS_00004882 mRNA upstream 1154379 10564447 ~ 10607118 (-) True XLOC_002624
TCONS_00004859 other downstream 255626 9141565 ~ 9141679 (-) True XLOC_002611
TCONS_00004856 other downstream 307669 9037358 ~ 9089636 (-) False XLOC_002608
TCONS_00004855 other downstream 380468 9016721 ~ 9016837 (-) True XLOC_002609
TCONS_00004848 other downstream 719477 8675890 ~ 8677828 (-) True XLOC_002605
TCONS_00004819 other downstream 1437467 7929771 ~ 7959838 (-) True XLOC_002588
TCONS_00004869 other upstream 124714 9534782 ~ 9538326 (-) False XLOC_002618
TCONS_00004879 other upstream 909240 10319308 ~ 10332427 (-) False XLOC_002623
TCONS_00004880 other upstream 919396 10329464 ~ 10329554 (-) True XLOC_002623
TCONS_00004903 other upstream 2351312 11761380 ~ 11764439 (-) True XLOC_002636
TCONS_00004913 other upstream 3894997 13305065 ~ 13305183 (-) True XLOC_002643

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_05828658_05832773.mRNA True 675 mRNA 0.47 5 CI01000304 5828658 ~ 5832803 (+)
bowfin (Amia calva) AMCG00020112 True 597 mRNA 0.47 5 CM030127.1 9931750 ~ 9943076 (-)