RNA id: XM_036959239.1


Basic Information

Item Value
RNA id XM_036959239.1
length 8573
RNA type mRNA
GC content 0.49
exon number 27
gene id LOC110502101
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 37576415 ~ 37723467 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagagagtgagggaaggagagagggtgatagagagaTTGGGAGTGTGAACAGCTCAATGTAAACAGGCTGTCAGAAAATAAAGTGCAGGGACATTGTCACCCTGCAGAGGCTGGGAAGAGAATCACATAGTATCTGCAGAGCAACACTCACCAGGgcagagagcgggagagaagagagggggagggcaaTGACCAGGGAGAGTCCacgacagtgagagagagaaagagagagcgaaagcaagagagagagagagagagagagagagagagagagagagagagagggagggagggaaaaaaggCTTAATTAATTCAGgctgatgggagggagggatgttgcTGCCTCTACCATGGCTCCAGTGCCTGTGCTGTGCCTCTCTGTGTAGCTGGAGCGGTACTGTGTTGCTGTAGCTGCTGTGAGAGGCTGCTCACTGCTCTGCCCACGGGGAAAGCGAGACCCATGCCCCGGCCGGCTTGGAAAGGACTCCCTATCAACCCATACTGAAAAAAGCATCAAACACAGGGATGGGCAGAGcttgTGTCTGtgtaatcagagagagagaggccaagaGACCTGCATCTGGCTGGACCGCTACATCACGTACTGATCCACCATCTCTGGTGTCTGTTTCTGCCACCACCTGCACTCACTGGGAAGGATCTGGGATGACGCCATGACAGATATTAACCTCCTCAGCTCCACACAGGGATAACCACACTAGAACCTCATTCCACCTCAGAGGCACATCCACCACCATCCTCCCTCACGTCCCTCCCAGCTGGCACCATGATGGGAGACGCAGTCGGGAGCTGGGAGTGTCTGAGTCCGTCTGAGTTCGGTCAGCTGCAGCAGTATAGCGAGTattCCACCAAGAAGCTGAAGGATGTTCTGGGGGAGTTTCACGGTGAAGGAGTCCTCTCCAAGTACAATCCTGAGCAGaAGCAAGACGTTCTCAACCAACCCATAGACTACCAGGGTTTCCAGCTTTTCATGGCCACCTACCTGGAGAACGACATCCCTGAGGAGCTGTGTCAGCACCTATTCACCTCCTTCAAGAGCAAGACAGGGGGCTGCTCTCCTGAGATGCCCCGAGCAGGAGTAGGACTCCTGGAGCCACGTTCCATTGATGCAGGCATCTCTATACAGACTGAAGTGGCCTGTGCCCCCATAACAGgAATGAATGGAAAGAGCATCCTGATAGCCATGGGTCGACCCACGCCGGAACCTTCCACTATGATGGCCTCATGTTCAGGTGCCATATCCATCTCTCCCTGCTCCTCCCGTTCCTCCTCACAGCGCTCTGGGATGGGGCCCCACGCGCCTGGGGGGTCCTACCGCTCACCTGCCTGCACCCAGGTCAAACCCTCCACATGCAGCAGTAGTAACACCCTGACCCCCACCCCAGCCAAGTCCCCAGCCTCCCCTCGGCTCTCCCCAGAGAGAatcagaggggagaagaggaggagcccGTCCCCATTACCTTCCCCCCAGGTGGTGTTTCTGAAGGACATTGTGTGTTACCTGTCCCTACTGGAGAGGGGCACACCAGAGGACAAGCTGGAGTTCATGTTCCGGCTGTACGACACAGATGGCAACGGAGTACTGGACAGCTCGGAACTGGACCGCATCATCAATCAGATGGTCCACGTGGCAGAGTACCTGGAATGGGACTCGGCAGAGCTGCGACCGATCCTGAAGGAGATGATGGAAGAGATAGACTATGACCGGGACGGAACAGTCACCCTGGAGGAGTGGATCAGAGGAGGCCTCACCACCATCCCTCTGCTGGTCCTGCTGGGCATGGAGACGaatGTTCAGGAAGATGGTCAGCATGTGTGGAAACTGAAGCACTTCAACAAGCCAGCCTACTGTAACTACTGCCACACCATGCTGCTGGGAGTTCGCAAGCAGGGCCTCTGCTgctccaTATGCAAGTACACAGTCCATGAACGCTGTGTGTCCAAAGACATTGCTGCCTGCATCAGCACCTATGCCAAGTCCCGCAGACACACCAATGTCATGCAGCATGTCTGGATGGAGGGAAACTCTCCCACTAAGTGTGACCGCTGTCACAGAAGTATCAAGTGCTACCAGGGCTTAACGGGCCTACACTGTGTGTGGTGTCAGATCACTCTCCACAATAAGTGTGCGTCCAACATGAAGCCGGAGTGTGATGGAGGAGCCCTTAGAGACCACACTCTACTCCCCTCCTACATCTGCCCTGTCGTCCTGgacCGTCATTCTGTTGTGAAGCGGGGTGAAGGGGACTCCCCGCCCAGCAGCAGCCCTGACAACATAAGTCAGAGCTTGAAATTCACAGGAGACGGACAAGCACTGCAGATCACTCCTCTCCCGGGTACACATCCCCTCCTGGTCCTGGTCAACCCAAAGagtggagggagacagggggagcgGGTATTGAGAAAGTTCCAGTACCTGCTGAACCCCAGGCAGGTGTACAGTCTCGACCGAGGGGGACCCATGGTGGGGCTCAACTTCTTCCATGATGTCCCTAATTTCCAGGTGCTGGCATGTGGAGGGGACGGGACAGTGGGATGGATCTTAGACTGTATTGACAAGGCCAACTTTGCAAAAGATCCCCCTGTGGCTATCCTCCCTCTGGGCACAGGGAACGACCTGGCAAGATGTCTACGCTGGGGCGGAGgttatgAGGGAGGCAGTCTGCTGAAGTTCCTGCGGGACATAGAACACAGCACAGATATGATGCTGGACCGATGGAACATCGACATTATCCCTGTAGacaaggaggagaagggagaccCAGTCCCCAACAGCATCGTCAACAACTACTTCTCCATTGGAGTGGACGCCTCCATCGCTCACCGCTTCCACTTGATGAGAGAGAAGCACCCAGAGAAATTCAACAGCAGAATGAAGAACAAGTTGTGGTACTTTGAGTTTGGCACCACTGAGACCATCTCTGCCACGTGCAAGAAACTCAATGAGTGTATCGAAGTCGAGTGTGACGGTATCATCCTGGACCTCAGCAGCACGTCATTGGAAGGCATCGCCGTCCTCAACATACCCAGCATGCACGGCGGCTCCAACCTGTGGGGAGAGACCAAGAAAAGGCGGAACTACAACCGCATGAGCAGGAAGGTTCCGGATAGGATGCCCACCAGTACCATCATCGATATAAAGGAGCTCAAGTTCTGTGTTCAGGacCTGAGTGACCAGTTGCTAGAGGTGGTGGGTCTGGAGGGCGCCATGGAGATGGGGAAGATCTACTCAGGCCTGAAGAGTGCAGGTCGCAGACTGGCCCAATGTGCTAACGTTACCATCAGGACGTCCAGGCTGCTGCCCATGCAGATCGATGGGGAACCTTGGATGCAGCCCCCATGTACGATCAATATCACACATAAGAACCAGGTTCCCATGCTACTGGGGCCTCCTCAGAAgacccccttcttcttcttcaagAGACGCAGCAGGAGTCGGGACTGAGTGAGGAGGACACTTCAAACTCCCCCATCTTCACACAAACACAACCCCTCGGCCCCTCCAACACCAACTGATGACTGGACTGGTGAACTGTTCCCCATGGAGGAACTGGAccttgggagaggagaggaggtgtagaggagaggaggtgtggaggggatcatttggagaaggagaggatattCTTAAAAGAGGAAAACAACTCAATAGACATTGCCCCTTGGACCTATGGCACCACTTCAGAATGAACCAACTTTTTCTCAGTGTAATGACCACTTCCTGTGTGTCCATGTTCTAGCTTCTAGAACTTCCTGTTAACTTTGAACTCTGACCCTGCCACTGGCCCACTAGCTCAGTTAACCCAGGCTCCAGACCCAGCTTCAGCCCAAACCCACCAGTACTGACACACTGCCTTGGCAAAACACAGTCCCAACCAACATATAGGTTCATTTAGGGATACTGCCATGATCCTcaaagggagggatagagagatggagggataaagaaacataaagagagagagagaaacagaagtgGGGTagaaggggagacagacagacaggaaggaaaGAAAAGAGTAGAAGAGAAGGAGTGAGGGATGGGATGATCGATACAGCAGATGaaagtaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcccctctCTTTGAGGAACCCGTTGAATAATGAATCAGAGCTTGTAGAGTATTCACTCCAGTGTCTTTCCACGACGCCagaacactgcacactgcctgagacatgaaacagaaagaGGACATCTATAATTGACTGCTTTGTTTATGCTTGACGGTGACAGCAGGGCAGAATCCACAGCAACAGTGGCCTGGGAAGCATGGGAAACTCAAACTAACATGTAGGGATTTTTTCCCCCCATCATCTTGGCCCACAACAAGCATATTTAGACTAGAATTTGAAGAATATCAATGGCGTCAGGGGGAAAGGGAAGTCAAAGTGTTTTTATCTCACCATCTTCACTAAGTTACTCAGGGCCATTGGTCTGTCCAGACGGATTCGTGGAACAGAACTCAGTGTAGAGGGGAGACAAGGTAGAGAGGACCTGACTTCCCtattactgtagagacagagatcaCTGAGAGCAGAGATAAGCCCTGTGTCCCGATCAGAAAAGCCCAGTAGGACAGCATTAGGAACAGAGCCCagtgtagagggagaggagactgaaggGGGTATGTTAGGTCCTTACTGTAATGTGTTAGGACAGCTTTAGATTGAATCAACAAGCCTCACCCAGAAACAGATGTCCCAGAGGACACTTTTAGAGGGTTAGAGATTGAAATGGATCCAGCTAGCTAGAGATAGAATAACAGCCTGACTCCCCCAGGCCTGAGGGGTCTGATTTACCATAGCTTGGACTGGACCTAAATTTAACCTGCTATTTCAGGAGGATCTACACTGTGAAGCACTATTCCTAATTACGGTGTGAAAACATCAGCTCGCTGTCCAAGAGTGCAAAACCCAGGGGCCTGACTGAAAATGGTGGGTGTAATTCCATTCATGTTGGTTGCTGGACCGTACCATTCAGGCAACAGGAAGACATGTTATCAATTCAAATGTGCTGAACTGAAAATGACTCTTAAAATCAAACCGAATGGCAAGAGCTGAACAGGCAAGAAAACAGTGAGGCAGAGATAGTGTGGCAGCTACTACGATATACCCTTATAGTACTGTCCCAACAATAGTAGCCAACTATATATGTGCAGACACAGTATTTGTATATTGTGGAAATAGGTGTGGTGCACATGAATGTGTTTTTTAATGATATATTATTAGTGTAGAGTTTGAGACTATAGAAGAGCACAGATCAGTGTTCTTTAGTGGGTCACTTCAATGACTCAGTCTGGGGCTGATACACAAAACATCCTCTCTGGCACCATAGCACCCTCGTACCCtaggatttattttattttattttttatttaacctttatttaaactaggcaagtcagttaaaaacaaattcttatttacaatgacggcctaccccggccaaacactggaccaattgtgcaccgccctatgtaGGATGTAAGGGTTAGGGTGCATGGCACAGGGGGGTGAGAGTGAAGTGAGCCAGCATTCAACACTGagtgtttgtcccaaatggcaccctattccctattcagtgcactacttttgactggcgTGAATCACAAACTGTCATTGTATGCCGGTGATCTTCTGTTGTTTATTTCGAACCCTCACAGTACAGTCCTCACGGTTATAGATACATGGGATATGAATTCGGCAAGATCTCTGGTTACAAGCCAAACCTGAACAAGTGAATGACACAGTATGTAGCGCAATTTTGATGGAATTCCCTTTAAAATGACCAAGGGCCCCTTCACCTACCTTGGCATAacaatgaccatcagctacaatGACTTGCTCAGGTTCAACTTCAAACCACTACTAGGACTTACCAAACAAGACATTTCACCATTGTCCACGCTGCCAATCTCCCTCGCAGGCCGCATTCATtgaccccatagggctctggtcaaaagtagtgcactgaatagggaatagggtaccattaggACTGACCCTGAGCTCCTCTTACGGGGCGAGGCTTTGATGTCTTCGGCCCTAAATCCCTTTAAAACCACACTGAGCCGGGACTATCATGTCCAGGACCCACTAAAACAGAGCCACATGTCCAATGACCATGGAGTAGAAGTAAaacagtcccaaatggcaccctagtccttatatagtgcactactttggaccagaaccctatcaaaagtattgcactatataggaacagggtgccatttgagacgtagaCTTTATCTCTATGGACCACAGGGTCTGTCTgaccctgcaacacctctaacCAGTACATACAGGCAACATTTCAATGACCACATCACCTCTACTATCATAACATAGAGTTGTCGGCCAATGGTCATTGGATATCGGGGCTCATTTTAGTCTTTATGGAGCCTGGATTGAGGCGACTCAGTGAGATGTGTGCATGTTTACATATCACTTTTCATTTACGGGAAATGATTTTCAATTTTAACTGTTATAATtatgtgtatatagatatttgTTTATATATTTTATCTGAAGTTACACCACCGCATGCCTGCTGAAACAAATGAGACAAAGAAATGTCTGTCTGCTTGAGGAGAGACCACGCTGATTGTTGCAACCCCCTCCTTCAAGCTATGACCTGTCCTGCTGTCGGGTCACATTAGCTGTTCAACCCCCCCAACTTATCCATTGCTTAAAAACCCATGACCTTGTGTGTTTATTTGTTGTGTTTCCCCATTGGTAGCTAGCATAGCATGTTGGTAATTCTGTGCTAGAACAGGACAGTGTTGGTTTGTCTTAGGTCAAAAGGAGAGAGACTTCCCAGGAGACATGTCCACTATGGCTGCCATTTTGTGACTCATCGTCAGAAGATGGAACGGGGATGCGGACACAGAACTCAGAACTCTTACCTATCAGACTATTAATCCTCAATGTTTGTGTCACTCAGTCACCACTCATCTCCAATCCGGTCATCAGAAAATGATCAATAGCCTTaactaacaaacaaacacacacggtGTCTCTAGTGCATTTTCTGCCAGGACACAACAACGACGGGACACTGACGAAGAAGAAGTTAGTAAAAAGAACAATGATAatgaactctctgtctctgttgcaATAACCCACTGCCATCACTAACCAGCTGCCCGATCCATAACCATCACTGCCTATCGGGATGGGTCCCCTCCACCCACTTCTAAGAGGATTTGGTTTAGCCCAGGTTGTCAACAACCACTGTTGAATGTGGCCTCTGGCCATCATAGAAACACCAGGGAGGAATGGACTGAGGCCATCCATTATCATGTTGACAGACAGTggttgcatcctaaatggcatcctattcccaattaagtgcactacttttgaccggagcactttgtgggccctggtcaaaagtagtggactatagggaatagggtgccatttgagtcgCCCTCCATGTTGCAGCAGGGATTTCTATGTACTGCACCTCAGCCACTGTTATAGCcataagtgtgtgtctgtgtccatgtACATGGTGATCATGATGTGCCTCTGCCTCTGAGGTGACCTAGAGGAGGGCTATATCAAAGAAACTAATAATGATGATAGTATACACAGTCTATTACAATTAGGATTGTTTAATTTTCCACCATTACATATCCACACTCTTCCACTGAATTGAGACAACCAGATGCATAAAAGGGCTCCAAGCATGTCATTTAGAATATGGCCAATACATTGCTGCATTTTATGCAGTATACCAGTTTGGATAATTGAAATGGAGCCAAAGATGGTCCTCATCACCATCCTCCCCATGTGAAACTATTGTCCCCTTGTCTCCACTGTCCCTCCTGACCATGGTCTTGTCAACCTTCAGAGACTCACAGAGGCAGTGAGGTTTATCGTGCTGTCACTGTTGTTGGTGTCGTCCTATTCTTAGGCCTGGACAGATTAACTAACAGTATTGAGTGACACTAGTGGCCGGGACAGATGCAGTCGGGCTAGAGCCATGCATACAGTTTATATCATTCCCGAGTGTGATGTTCTACATGTGTGTTAAAACCCATGGGCCTGTTGTGTTTACCATAGAAATAGCATAGCAACATGattggtaaactcatgggtacactcaaaatggctgccagtccactCATTAtggcatcattgacttgaatggggaggcCCCGTTCTGTGGTGTTTACTCCCTCAGGGtcaatgtatgtacagtatgtatgtatgtatgtatgtatgtatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtatatgtatgtatgtatgcagctGTCCATATGCCTGTAGCGCCCGGCGAGGGTTAGGGGCAGACTGTGACAGTAGACCCTGTGATTGGACAAAAATAAGATATTATCATATATTCTCATCGTCTGCCCTAGCTGGGTTTATCGTCTGTTTGTTGCCCTCGCCGTTGTGTTTGTTAGTTGTATGTTGGACAAAAGAAtaatcaaataaacaaagaggATGAATATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2067252 lncRNA downstream 481 37545729 ~ 37575934 (-) True LOC110501819
TU2067038 lncRNA downstream 36916 37539300 ~ 37539499 (-) True G1806717
TU2067029 lncRNA downstream 46731 37529365 ~ 37529684 (-) True G1806708
TU2067007 lncRNA downstream 92730 37476336 ~ 37483685 (-) True G1806687
TU2067005 lncRNA downstream 93797 37475963 ~ 37482618 (-) True G1806686
TU2067383 lncRNA upstream 35391 37758858 ~ 37759135 (-) True G1807018
TU2067395 lncRNA upstream 50741 37774208 ~ 37774524 (-) True G1807030
TU2067458 lncRNA upstream 124566 37848033 ~ 37848768 (-) True G1807074
TU2067459 lncRNA upstream 126634 37850101 ~ 37850374 (-) True G1807075
TU2067466 lncRNA upstream 128463 37851930 ~ 37853632 (-) True LOC110501831
XM_036959235.1 mRNA downstream 16613 37545726 ~ 37559802 (-) False LOC110501819
XM_036959236.1 mRNA downstream 16613 37545726 ~ 37559802 (-) False LOC110501819
XM_036959237.1 mRNA downstream 16613 37545726 ~ 37559802 (-) False LOC110501819
XM_036959238.1 mRNA downstream 16613 37545726 ~ 37559802 (-) False LOC110501819
XM_036959234.1 mRNA downstream 47789 37432933 ~ 37528626 (-) True LOC110501818
LOC110501826 mRNA upstream 39373 37762840 ~ 37765227 (-) True LOC110501826
XM_021579666.2 mRNA upstream 46193 37769660 ~ 37770890 (-) True LOC110501827
XM_036959243.1 mRNA upstream 55804 37779271 ~ 37779640 (-) True LOC118943607
XM_021579661.2 mRNA upstream 75512 37798979 ~ 37800091 (-) True LOC110501821
XM_021579995.2 mRNA upstream 107075 37830542 ~ 37831485 (-) True LOC110502127
TU2066735 other downstream 463941 37043561 ~ 37112474 (-) True G1806449
TU2066670 other downstream 640328 36935658 ~ 36936087 (-) True G1806393
TU2066409 other downstream 997704 36577748 ~ 36578711 (-) True LOC110501806
TU2066167 other downstream 1516647 36057844 ~ 36059768 (-) True G1805927
TU2064375 other downstream 2356716 35207463 ~ 35219699 (-) True LOC110502094
TU2067385 other upstream 36504 37759971 ~ 37760248 (-) True G1807020
TU2068246 other upstream 469955 38193422 ~ 38195096 (-) True G1807750
TU2068217 other upstream 485323 38208790 ~ 38213187 (-) False G1807731
TU2068420 other upstream 852399 38575866 ~ 38612287 (-) True LOC110502145
TU2068897 other upstream 1220669 38944136 ~ 38944530 (-) False G1808299

Expression Profile