RNA id: LOC110501826


Basic Information

Item Value
RNA id LOC110501826
length 510
RNA type mRNA
GC content 0.56
exon number 3
gene id LOC110501826
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 37762840 ~ 37765227 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGACCGCATCGGAAAGATCATCTTCTATGAGGACAAAAACTTCCAGGGTCACCACTTTGAATGCAGTAGCGATTGCCCTGAGCTGAGCTCCCACTTAAGCCGCTGCAACTCCATCCGGGTGGAGAGTGGGAACTGGGTGCTGTACGAGAGGCCCAACTACCTGGGCTCTCAGTACATCCTGACCAGGGGGGAGTACCTTGACTACCAGAGCTGGATGGGCTACAATAACAACATCAGGTCCTGCCGCATCATCCGCAATCTAACTGGCATGTTCAGGATCTGAATCTACAAGCGTCCTGACTTTGCCGGTCAGACGATGGAGTTCAGCGAAGCCAAGCCTAACCTCCCCGAGCACTGGCGTCACCGCGAGGTGCACTGGGTGTTCTATGAGCACCCCAACTACCGCGGCCGCCAGCACCTGCTGGAGAGGGCAGAGTACCGCCGCTTCACCGAGTGGAACGCCATGCACCCTAAAGTGGGGTCCATCCGCCACGTTCAGAACTTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2067383 lncRNA downstream 3705 37758858 ~ 37759135 (-) True G1807018
TU2067253 lncRNA downstream 181475 37577651 ~ 37581365 (-) True LOC110502101
TU2067254 lncRNA downstream 184774 37576848 ~ 37578066 (-) False LOC110502101
TU2067252 lncRNA downstream 186906 37545729 ~ 37575934 (-) True LOC110501819
TU2067038 lncRNA downstream 223341 37539300 ~ 37539499 (-) True G1806717
TU2067395 lncRNA upstream 8981 37774208 ~ 37774524 (-) True G1807030
TU2067458 lncRNA upstream 82806 37848033 ~ 37848768 (-) True G1807074
TU2067459 lncRNA upstream 84874 37850101 ~ 37850374 (-) True G1807075
TU2067466 lncRNA upstream 86703 37851930 ~ 37853632 (-) True LOC110501831
TU2068053 lncRNA upstream 99737 37864964 ~ 37866937 (-) True G1807587
XM_036959239.1 mRNA downstream 39373 37576415 ~ 37723467 (-) False LOC110502101
XM_036959240.1 mRNA downstream 39373 37576415 ~ 37723467 (-) False LOC110502101
XM_036959235.1 mRNA downstream 203038 37545726 ~ 37559802 (-) False LOC110501819
XM_036959236.1 mRNA downstream 203038 37545726 ~ 37559802 (-) False LOC110501819
XM_036959237.1 mRNA downstream 203038 37545726 ~ 37559802 (-) False LOC110501819
XM_021579666.2 mRNA upstream 4433 37769660 ~ 37770890 (-) True LOC110501827
XM_036959243.1 mRNA upstream 14044 37779271 ~ 37779640 (-) True LOC118943607
XM_021579661.2 mRNA upstream 33752 37798979 ~ 37800091 (-) True LOC110501821
XM_021579995.2 mRNA upstream 65315 37830542 ~ 37831485 (-) True LOC110502127
XM_036959075.1 mRNA upstream 68826 37834053 ~ 37835172 (-) True LOC110502140
TU2067385 other downstream 2592 37759971 ~ 37760248 (-) True G1807020
TU2066735 other downstream 650366 37043561 ~ 37112474 (-) True G1806449
TU2066670 other downstream 826753 36935658 ~ 36936087 (-) True G1806393
TU2066409 other downstream 1184129 36577748 ~ 36578711 (-) True LOC110501806
TU2066167 other downstream 1703072 36057844 ~ 36059768 (-) True G1805927
TU2068246 other upstream 428195 38193422 ~ 38195096 (-) True G1807750
TU2068217 other upstream 443563 38208790 ~ 38213187 (-) False G1807731
TU2068420 other upstream 810639 38575866 ~ 38612287 (-) True LOC110502145
TU2068897 other upstream 1178909 38944136 ~ 38944530 (-) False G1808299
TU2068898 other upstream 1178909 38944136 ~ 38944530 (-) True G1808299

Expression Profile